3IYD


Conserved Protein Domain Family
rpoB

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TIGR02013: rpoB 
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DNA-directed RNA polymerase, beta subunit
This model describes orthologs of the beta subunit of Bacterial RNA polymerase. The core enzyme consists of two alpha chains, one beta chain, and one beta' subunit. [Transcription, DNA-dependent RNA polymerase]
Statistics
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PSSM-Id: 273928
Aligned: 12 rows
Threshold Bit Score: 1811.18
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3IYD_C          8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEqdp---------------egqYGLEAAFRSVFPIQSYSGNSELQYVs 72   Escherichia c...
P37870         10 RHRQRRSYARISEVLELPNLIEIQTSSYQWFLD---------------------EGLREMFQDISPIEDFTGNLSLEFId 68   Bacillus subt...
O84317          3 KCPERVSIKKKEDILDLPNLVEVQIKSYKQFLQigkla-----------eerenIGLEEVFREIFPIKSYNEATILEYLs 71   Chlamydia tra...
O83269          7 KTHRVYVGRDVRNFMDIPDLIEIQLRSYDTFLHgarntpsgad--tlisgtreeLGLEDVFKTTFPIESSTGDMTLEYQs 84   Treponema pal...
P00575          8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEqdp---------------egqYGLEAAFRSVFPIQSYSGNSELQYVs 72   Escherichia coli
WP_000037868    8 KNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYske---------------gkeSGIEKVFKSIFPIQDEHNRITLEYAg 72   Helicobacter ...
WP_005873809    5 TNNKRINFASIKNPLFYPDFLEVQLKSFHDFLQldtpp-----------errkkEGLYKVFAENFPITDTRNNFVLEFLd 73   Porphyromonas...
WP_010931849    7 TPTPCIDFSKIQSIINPPDLLKVQLDSFHNFIQdsvpl-----------ekrkdQGLEKVLRSAFPITDTRGLYLLEYIs 75   Chlorobaculum...
WP_011015993    3 KLIERLDFGKIKARGEMPHFLEFQLNSYEDFLQtnmsp-----------nkreeKGFELAFKEIFPIESSNGDVRLEYIg 71   Fusobacterium...
WP_011056489    1 ---MASNQIYTPPAFTLPDLVEIQRASFRWFLE---------------------EGLIEELESFSPITDYTGKIELHFLa 56   Thermosynecho...
WP_011029792   18 TAPLRISFAKIKEPLEVPNLLALQTESFDWLLGndawkarvesalesgqdvptkSGLEEIFEEISPIEDFSGSMSLTFRd 97   Streptomyces ...
WP_010918390    8 KKRIRKSFGRIPEAVQMPNLIEVQRSSYEQFLQretrp-----------glrrdEGVEAVFKSVFPIKDFNERAVLEYVs 76   Caulobacter v...
3IYD_C         73 --YRLGEPVFDVQ---ECQIRGVTYSAPLRVKLRLVIYEreap---egtVKDIKEQEVYMGEIPLMTDNGTFVINGTERV 144  Escherichia c...
P37870         69 --YSLGEPKYPVE---ESKERDVTYSAPLRVKVRLINKE----------TGEVKDQDVFMGDFPIMTDTGTFIINGAERV 133  Bacillus subt...
O84317         72 --YNLGVPKYSPe---ECIRRGITYSVTLKVRFRLTDet------------gIKEEEVYMGTIPIMTDKGTFIINGAERV 134  Chlamydia tra...
O83269         85 --YSLDEKNIKFSe-aECKQKGLTYAIPLKALVDLRFNN----------TGEIRRKDIYMGDIPKMTERGTFIINGAERV 151  Treponema pal...
P00575         73 --YRLGEPVFDVQ---ECQIRGVTYSAPLRVKLRLVIYEreap---egtVKDIKEQEVYMGEIPLMTDNGTFVINGTERV 144  Escherichia coli
WP_000037868   73 --CEFGKSKYTVR---EAMERGITYSIPLKIKVRLILWEkdtksgekngIKDIKEQSIFIREIPLMTERTSFIINGVERV 147  Helicobacter ...
WP_005873809   74 --YYIDPPKYSIe---ECLSRGLTYSVPLKAKLKLYCTDpdh------edFATVIQDVFLGPIPYMTSSGTFVINGAERV 142  Porphyromonas...
WP_010931849   76 --YSFDKPKYTVe---ECIERGLTYDVSLKIKLKLSYKDeade----pdwKETIQQEVYLGRIPYMTDRGTFIINGAERV 146  Chlorobaculum...
WP_011015993   72 --YELHEAEAPLNdelECKKRGKTYSNSLKVRLRLINkk---------mgNEIQESLVYFGEVPKMTDRATFIINGAERV 140  Fusobacterium...
WP_011056489   57 kdYRLKEPKYSVD---EAKRRDATYSMQMYVPTRLINKE----------NGNIIDQDVFIGDLPLMTDRGTFIINGAERV 123  Thermosynecho...
WP_011029792   98 --HRFEPPKNSID---ECKDRDFTYAAPLFVTAEFTNNE----------TGEIKSQTVFMGDFPLMTNKGTFVINGTERV 162  Streptomyces ...
WP_010918390   77 --YEFEEPKYDVE---ECIQRDMTFAAPLKVKLRLIVFEteeet-garsVKDIKEQDVYMGDIPLMTDKGTFIVNGTERV 150  Caulobacter v...
3IYD_C        145 IVSQLHRSPGVFFDSDKGkTHSSgkvLYNARIIPYRGSWLDFEFD-PKDNLFVRIDRRR---KLPATIILRALNYTteqi 220  Escherichia c...
P37870        134 IVSQLVRSPSVYFSGKVDkNGKK---GFTATVIPNRGAWLEYETD-AKDVVYVRIDRTR---KLPVTVLLRALGFG---- 202  Bacillus subt...
O84317        135 VVSQVHRSPGINFEQEK--HSKgn-vLFSFRIIPYRGSWLEAVFD-INDLIYIHIDRKKrrrKILAMTFIRALGYStdad 210  Chlamydia tra...
O83269        152 VVSQIHRSPGVVFSHEK---DKEgreVFSSRIIPYRGSWLEFEIDqKKDLIYAKLDKKR---RILGTVFLRALHYEtreq 225  Treponema pal...
P00575        145 IVSQLHRSPGVFFDSDKGkTHSSgkvLYNARIIPYRGSWLDFEFD-PKDNLFVRIDRRR---KLPATIILRALNYTteqi 220  Escherichia coli
WP_000037868  148 VVNQLHRSPGVIFKEEES-STSLnklIYTGQIIPDRGSWLYFEYD-SKDVLYARINKRR---KVPVTILFRAMDYQkqdi 222  Helicobacter ...
WP_005873809  143 IVSQLHRSPGVFFGQSL--HTNgt-kLYSARIIPFKGSWIEFATD-INNVMYAYIDRKK---KLPVTTLLRAIGFEadkd 215  Porphyromonas...
WP_010931849  147 VVAQLHRSPGVVFSEAV--HPNgk-kMYSAKIVPTRGSWIEFQTD-INNQIFVYIDQKK---NFLVTALLRAIGFAkded 219  Chlorobaculum...
WP_011015993  141 VVSQLHRSPGVSFSKEV--NTQTgkdLFSGKIIPYKGTWLEFETD-KNDFLSVKIDRKK---KVLATVFLKAVDFFkdnn 214  Fusobacterium...
WP_011056489  124 IVNQIVRSPGVYYKSETDkNGRR---TYNASLIPNRGAWLKFETD-KNDLLWVRIDKTR---KLSAHVLLKALGL----- 191  Thermosynecho...
WP_011029792  163 VVSQLVRSPGVYFDSSIDkTSDKd--IFSAKIIPSRGAWLEMEID-KRDMVGVRIDRKR---KQSVTVLLKALGWT---- 232  Streptomyces ...
WP_010918390  151 IVSQMHRSPGVFFDHDKGkTHASgklLFAARVIPYRGSWLDFEFD-AKDIVYVRIDRRR---KLPATTFLYALGMDgeei 226  Caulobacter v...
3IYD_C        221 ldlffekvifeirdnklqmelvperlrgetasfdieangkvyvekgrritarhi--rqlekddvklievpveyiagkvva 298  Escherichia c...
P37870            --------------------------------------------------------------------------------      Bacillus subt...
O84317        211 iieeffsveerslrlekdfvalvgkvla---------------------------------------------------- 238  Chlamydia tra...
O83269        226 iieafyaiektpvcqdraeyelltgkilarsvtvene------------------------------------qgetrvl 269  Treponema pal...
P00575        221 ldlffekvifeirdnklqmelvperlrgetasfdieangkvyvekgrritarhi--rqlekddvklievpveyiagkvva 298  Escherichia coli
WP_000037868  223 ikmfyplvkvryendkylipfasldanqrmefdlkdpqgkvillagkkltsrkik-elkenhlewveypmdillnrhlae 301  Helicobacter ...
WP_005873809  216 ildifnlaeevkvtkanlkkcigrklaarvintyi----------------------------------------ddlsd 255  Porphyromonas...
WP_010931849  220 ilglfdlveevevssksskreqllgqyl---------------------------------------------------- 247  Chlorobaculum...
WP_011015993  215 eirdyflevkelklkalykkyskepeellnvlkqe-----------------------------------------ldgs 253  Fusobacterium...
WP_011056489      --------------------------------------------------------------------------------      Thermosynecho...
WP_011029792      --------------------------------------------------------------------------------      Streptomyces ...
WP_010918390  227 lttfydvvpfekrsggwatpykperwrgvkpefplvdadtgeevapagtkitarqakkfadgglktlllapealtgryla 306  Caulobacter v...
3IYD_C        299 kdyidestgelicaanmelsldllaklsqsghkrIETLFTNDLD------H------GPYISETLRVDPTNDRLS---AL 363  Escherichia c...
P37870        203 ----------------------------------SDQEILDLIG------E------NEYLRNTLDKDNTENSDK---AL 233  Bacillus subt...
O84317        239 ---dnvvdadsslvygkageklstamlkrildagVQSLKIAVGA------De-----NHPIIKMLAKDPTDSYEA---AL 301  Chlamydia tra...
O83269        270 ykagekihphviddllqngicevyiinleaegslRSAVVINCLE------R------EEMKFSKSGAQDELSREE---AL 334  Treponema pal...
P00575        299 kdyidestgelicaanmelsldllaklsqsghkrIETLFTNDLD------H------GPYISETLRVDPTNDRLS---AL 363  Escherichia coli
WP_000037868  302 pvmvgkevlldmltqldknklekihdlgvqefviINDLALGHDAsiiqsfS------ADSESLKLLKQTEKIDDEnalAA 375  Helicobacter ...
WP_005873809  256 edtgevvsmeritvvvdreveltednieailnsnTQTILLHRND------Snt--sdYSIIFNTLQKDPCNSEKE---AL 324  Porphyromonas...
WP_010931849  248 ---asdiidmttgevvparaaiteeiidqivaagYKTVKVMKTT------SpekgvdKSVIINTILNDSSATEEE---AL 315  Chlorobaculum...
WP_011015993  254 ivkedildeetgefiaeaeafineevinklienkVDKISYWYVG------Pe-----SKLVANTLMNDTTLTEDE---AV 319  Fusobacterium...
WP_011056489  192 ----------------------------------TDSEILERLR------H------PEYYQKTVEKEGKFSEEE---AL 222  Thermosynecho...
WP_011029792  233 ----------------------------------TEQ-ILEEFG------E------YESMRATLEKDHTQGQDD---AL 262  Streptomyces ...
WP_010918390  307 rdavnmatgeiyaeagdeldvtsiqaladqgfstIDVLDIDHVT------V------GAYMRNTLRVDKNAIRED---AL 371  Caulobacter v...
3IYD_C        364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEG--------------------------- 416  Escherichia c...
P37870        234 LEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGRYKINKKLHIKNRLFnqrlaetlvdpetgeilaekgqildrr 313  Bacillus subt...
O84317        302 KDFYRRLRPGEPATLVNARSTIMRLFFDAKRYNLGRVGRYKLNKKLGfpldd---------------------------- 353  Chlamydia tra...
O83269        335 CIVYSALRPSDPMTMDAAEKDLQTMFFSPRRYDLGRVGRYKLNKKFRSDSPTT--------------------------- 387  Treponema pal...
P00575        364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEG--------------------------- 416  Escherichia coli
WP_000037868  376 IRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNHKLGLHVPDY--------------------------- 428  Helicobacter ...
WP_005873809  325 YYVYRQLRNAEPADDASAREVITNLFFSDKRYDLGDVGRYRINKKLNlni------------------------------ 374  Porphyromonas...
WP_010931849  316 EIVYEELRSNEAPDIDAARSFLERTFFNQKKYDLGDVGRYRIQKKLQNELAELsaylekrpelkelsdaiy--------- 386  Chlorobaculum...
WP_011015993  320 VEVFKKLRPGDQVTVDSARSLIRQMFFNPQRYDLEPVGRYKMNKRLKldv------------------------------ 369  Fusobacterium...
WP_011056489  223 IELYKKLRPGEPPTVSGGQQLLESRFFDPKRYDLGRVGRYKLNRKLQLNIPDS--------------------------- 275  Thermosynecho...
WP_011029792  263 LDIYRKLRPGEPPTREAAQTLLENLYFNPKRYDLAKVGRYKVNKKLGADEPLD--------------------------- 315  Streptomyces ...
WP_010918390  372 FDIYRVMRPGEPPTVEAAEAMFKSLFFDAERYDLSSVGRVKMNMRLEQDVSDE--------------------------- 424  Caulobacter v...
3IYD_C        417 ---------------------SGILSKDDIIDVMKKLIDIRNG------------------------------------- 438  Escherichia c...
P37870        314 tldkvlpylengigfrklypnGGVVEDEVTLQSIKIFAPTDQEgeqvinvignayieeeiknitpadiissisyffnllh 393  Bacillus subt...
O84317        354 -----------------etlsQVTLRKEDVIGALKYLIRLRMGd------------------------------------ 380  Chlamydia tra...
O83269        388 ---------------------ECTLTLDDIVNTMKFLIRMYSG------------------------------------- 409  Treponema pal...
P00575        417 ---------------------SGILSKDDIIDVMKKLIDIRNG------------------------------------- 438  Escherichia coli
WP_000037868  429 ---------------------ITTLTHEDIITTVKYLMKIKNN------------------------------------- 450  Helicobacter ...
WP_005873809  375 ------------------dpdIKVLTNEDIIEIIKYLIELVNS------------------------------------- 399  Porphyromonas...
WP_010931849  387 ---erilqtistyseepigedILVLTHYDIIAVINYLIKLING------------------------------------- 426  Chlorobaculum...
WP_011015993  370 ------------------peeQISLTKEDVLGTIKYVIELNNGe------------------------------------ 395  Fusobacterium...
WP_011056489  276 ---------------------VRILTPEDILAAIDYLINLEFD------------------------------------- 297  Thermosynecho...
WP_011029792  316 ---------------------AGVLTTDDVIATIKYLVKLHAGetetvg--------------------------esgre 348  Streptomyces ...
WP_010918390  425 ---------------------VRILRKEDVLAVLKVLVGLRDG------------------------------------- 446  Caulobacter v...
3IYD_C        439 -KGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD--L--DTLMPQDMINAKPISAAVKEFFGSSQLSQ 513  Escherichia c...
P37870        394 gVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQD--T--NTITPQQLINIRPVIASIKEFFGSSQLSQ 469  Bacillus subt...
O84317        381 eKTSIDDIDHLANRRVRSVGELIQNHCRSGLARMEKIVRERMNLFD--FssDTLTPGKIISAKGLVSVLKDFFSRSQLSQ 458  Chlamydia tra...
O83269        410 -DAQEDDIDHLGNRRIRSVGELMTNTLKTAFLRMERIAKERMSSKE--T--ETIKPQDLISIKPIMAAIKEFFGASQLSQ 484  Treponema pal...
P00575        439 -KGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD--L--DTLMPQDMINAKPISAAVKEFFGSSQLSQ 513  Escherichia coli
WP_000037868  451 -QGKIDDRDHLGNRRIRAVGELLANELHSGLVKMQKTIKDKLTTMSgaF--DSLMPHDLVNSKMITSTIMEFFMGGQLSQ 527  Helicobacter ...
WP_005873809  400 -KASVDDIDHLSNRRVRTVGEQLYNQFGIGLARMARTVRDRMNVRD--N--EVFTPIDLVNAKTISSVVNSFFGTNALSQ 474  Porphyromonas...
WP_010931849  427 -MAEVDDVDHLANRRVRSVGEQLAAQFVIGLARMGKNVREKLNSRD--T--DKIAPADLINARTVSSVVSSFFATSQLSQ 501  Chlorobaculum...
WP_011015993  396 qNVHTDDIDNLSNRRIRGVGELLLMQIKTGLAKMNKMVREKMTTQD--I--ETVTPQSLLNTRPLNALIQDFFGSGQLSQ 471  Fusobacterium...
WP_011056489  298 -LGTIDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSD--T--DSLTPTSLVNPKPLVAAIKEFFGSSQLSQ 372  Thermosynecho...
WP_011029792  349 iVVETDDIDHFGNRRIRNVGELIQNQVRTGLARMERVVRERMTTQD--V--EAITPQTLINIRPVVASIKEFFGTSQLSQ 424  Streptomyces ...
WP_010918390  447 -RGEIDDIDNLGNRRVRSVGELLENQYRVGLLRMERAIKERMSSVD--I--DTVMPHDLINAKPAAAAVREFFGSSQLSQ 521  Caulobacter v...
3IYD_C        514 FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRk 593  Escherichia c...
P37870        470 FMDQTNPLAELTHKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAKVNRFGFIETPYRr 549  Bacillus subt...
O84317        459 FMDQTNPVAELTHKRRLSALGPGGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETPYRv 538  Chlamydia tra...
O83269        485 FMDQVNPLAELTHKRRLNALGPGGLSRERAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSMANYARVNGYGFLEVPYVr 564  Treponema pal...
P00575        514 FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYR- 592  Escherichia coli
WP_000037868  528 FMDQTNPLSEVTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLGFIEAPYKk 607  Helicobacter ...
WP_005873809  475 FMDQTNPLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYAKISDLGFITTPYRe 554  Porphyromonas...
WP_010931849  502 FMDQTNPLAEMTNKRRVSALGPGGLTRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVYAEINDKGFIQTPYRv 581  Chlorobaculum...
WP_011015993  472 FMDQSNPLAELTHKRRISALGPGGLSRERAGFEVRDVHDSHYGRICPIETPEGPNIGLIGSLATYAKINKYGFIETPYVk 551  Fusobacterium...
WP_011056489  373 FMDQTNPLAELTHKRRLSALGPGGLTRERAGFAVRDIHPSHYGRICPIETPEGPNAGLIGSLATHARVNEYGFIETPFYp 452  Thermosynecho...
WP_011029792  425 FMDQNNPLSGLTHKRRLNALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIGSLASYGRINPFGFIETPYR- 503  Streptomyces ...
WP_010918390  522 FMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATHARVNKYGFIESPYR- 600  Caulobacter v...
3IYD_C        594 vTDG--VVTDEi-hYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKG-ESSLFSRDQVDYMDVSTQQVVSVGASLIP 669  Escherichia c...
P37870        550 vDPEtgKVTGRi-dYLTADEEDNYVVAQANARLDDEGAFIDDSIVARFRG-ENTVVSRNRVDYMDVSPKQVVSAATACIP 627  Bacillus subt...
O84317        539 vRDGi-VTDEi--eYMTADVEEECVIAQASAELDEYDMFKTPVCWARYKG-EAFEADTSTVTHMDVSPKQLVSVVTGLIP 614  Chlamydia tra...
O83269        565 vRDGvvTKEIE---YLDAMDEDRYYIGQDSTAVGPDGVIRVDHVSCRHRG-DYSTRSPKDIQYMDVSPKQIISVSASLIP 640  Treponema pal...
P00575        593 -KVTdgVVTDEi-hYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKG-ESSLFSRDQVDYMDVSTQQVVSVGASLIP 669  Escherichia coli
WP_000037868  608 vVDGkvVGETI---YLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEG-EIVLNEKSKVTLMDLSSSMLVGVAASLIP 683  Helicobacter ...
WP_005873809  555 vKNGkvDFSDNglkYYTAEEEEEKTVAQGNAPLDENGRFVRERVKARYES-DFPLVTPDEVDLMDVSPTQIASIAAALIP 633  Porphyromonas...
WP_010931849  582 vENGqvTDKv---vMLSAEDEENKITVPVSIELDENNRIAAESVQARTKG-DYPLVLAEEVNYMDVSPVQIVSAAAALIP 657  Chlorobaculum...
WP_011015993  552 vENGvaLVDDv--rYLAADEEDGLFIAQADTKLDKNNKLQG-LVVCRYGH-EIVEIEPERVNYMDVSPKQVVSVSAGLIP 627  Fusobacterium...
WP_011056489  453 vKDGrvLKDQPp-iYMTADEEDDKRVAPGDVPTDENGYILGDVVPVRYRQdFTTTTP-DQVDYVAVSPVQIISVATSLIP 530  Thermosynecho...
WP_011029792  504 -KVVegQVTDDv-dYLTADEEDRFVIAQANAALGDDMRFAEARVLVRRRGgEVDYVPGDDVDYMDVSPRQMVSVATAMIP 581  Streptomyces ...
WP_010918390  601 -RVKdgKPQDEv-vYMSAMEESKHVIAQSNIKVAEG-EIVEDLVPGRING-EPTLLQKETVDLMDVSPRQVVSVAAALIP 676  Caulobacter v...
3IYD_C        670 FLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMypg----- 744  Escherichia c...
P37870        628 FLENDDSNRALMGANMQRQAVPLMQPEAPFVGTGMEYVSGKDSGAAVICKHPGIVERVEAKNVWVRRYEEVDgqkv---- 703  Bacillus subt...
O84317        615 FLEHDDANRALMGSNMQRQAVPLLKTEAAIVGTGLEGRAAKDSGAIIVAQEDGVVEYVDSYEIVVAKKNNPTl------- 687  Chlamydia tra...
O83269        641 FLEHDDANRALMGSNMQRQGVPLIFPEPPRVGTGMEEKCAYDSGVLVKAKQDGTVAYVSSEKIVVCSAAASGee------ 714  Treponema pal...
P00575        670 FLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMypg----- 744  Escherichia coli
WP_000037868  684 FLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTGIEKIIARDSWGAIKANRAGVVEKIDSKNIYILGESKEEa------- 756  Helicobacter ...
WP_005873809  634 FLEHDDANRALMGSNMMRQAVPLLRPESPIVGTGIEGKLVKDSRTQIVAERGGEVVFVDASCIKIRYDRTADeefvs--- 710  Porphyromonas...
WP_010931849  658 FLEHDDGNRALMGANMQRQAVPLLVSEAPIVGTGMEAKVARDSRAVIVAEGPGVVQCVTADRIEVRYDLDPEnntvslld 737  Chlorobaculum...
WP_011015993  628 FLEHDDANRALMGSNMQRQAVPLLKSEAPFIGTGLERKVAVDSGAVVTTKVSGKVTYVDGKKIIIEDKDKk--------- 698  Fusobacterium...
WP_011056489  531 FLEHDDANRALMGSNMQRQAVPLLRPQRPLVGTGLEAQAARDSGMVILSQTNGVVSYVDANQIRVktd------------ 598  Thermosynecho...
WP_011029792  582 FLEHDDANRALMGANMMRQAVPLIKSESPLVGTGMEYRSAADAGDVVKAEKAGVVQEVSADYITTtnd------------ 649  Streptomyces ...
WP_010918390  677 FLENDDANRALMGSNMQRQAVPLVQSDAPLVGTGMEAVVARDSGAVVIAKRTGVVEQIDGTRIVIRAT-EETdpa----- 750  Caulobacter v...
3IYD_C        745 -eagIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVV 823  Escherichia c...
P37870        704 -kgnLDKYSLLKFVRSNQGTCYNQRPIVSVGDEVVKGEILADGPSMELGELALGRNVMVGFMTWDGYNYEDAIIMSERLV 782  Bacillus subt...
O84317        688 ----KDRYQLKKFLRSNSGTCINQTPLCSVGDVVTHGDVLADGPATDKGELALGKNVLVAFMPWYGYNFEDAIIISERLI 763  Chlamydia tra...
O83269        715 ---qEVVYPLLKYQRTNQDTCYHQRPIVHVGDRVQVGDALADGPATYRGELALGRNILVGFVPWNGYNYEDAILISHRVV 791  Treponema pal...
P00575        745 -eagIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVV 823  Escherichia coli
WP_000037868  757 ---yIDAYSLQKNLRTNQNTSFNQVPIVKVGDKVGAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSECIT 833  Helicobacter ...
WP_005873809  711 fddaIVTYYLPKYRKTNQSTTIDLHPICSKGDRVEAGQILTEGYSTQGGELALGRNVQVAYMPWKGYNYEDAIVLNERMV 790  Porphyromonas...
WP_010931849  738 pdegVKVYKLIKFKRSNQDTCISQRPLVHNGQRVNAGDVLADSSSTDNGELALGKNVLVAFMPWRGYNFEDAIVLSERLV 817  Chlorobaculum...
WP_011015993  699 ----EHIYRLLNYERSNQSMCLHQTPLVDLGDKVKAGDIIADGPATKLGDLSLGRNILMGFMPWEGYNYEDAILISDRLR 774  Fusobacterium...
WP_011056489  599 -ngpEITYTLQKYQRSNQDTCLNQRPIVFVGDRVQAGQVIADGSATEGGELALGQNILVAYMPWEGYNYEDAILISERLV 677  Thermosynecho...
WP_011029792  650 -dgtYITYRLAKFSRSNQGTSVNQKVIVAEGDRIIEGQVLADGPATENGEMALGKNLLVAFMPWEGHNYEDAIILSQRLV 728  Streptomyces ...
WP_010918390  751 -rsgVDIYRMSKFQRSNQSTCINQRPLVKVGDRIVAGDIIADGPSTELGELALGRNALVAFMPWNGYNFEDSILISERIV 829  Caulobacter v...
3IYD_C        824 QEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLR 903  Escherichia c...
P37870        783 KDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDDRGIIRIGAEVKDGDLLVGKVTPKGVTELTAEERLLH 862  Bacillus subt...
O84317        764 KQDAYTSIYIEEFELTARDTKLGKEEITRDIPNVSEEVLANLGEDGVVRIGAEVKPGDILVGKITPKSETELAPEERLLR 843  Chlamydia tra...
O83269        792 KEDMFTSVHIKEFSTEVRETKLGSERMTNDIPNKSEKNLDNLDAEGIIRIGSKVRAGDVLIGKITPKSESETTPEFRLLN 871  Treponema pal...
P00575        824 QEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLR 903  Escherichia coli
WP_000037868  834 KDDIFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMILVGKTSPKGEIKSTPEERLLR 913  Helicobacter ...
WP_005873809  791 REDFFTSVHVDEYILEVRETKRGLEELTSDIPNVSEDATRDLDENGIVRIGAHIEPGDILIGKITPKGESDPTPEEKLLR 870  Porphyromonas...
WP_010931849  818 YDDVFTSIHVHEFESSVRDTKRGEEQFTRDIYNVSEDALRNLDENGIVRIGAEVKERDILVGKITPKGESDPTPEEKLLR 897  Chlorobaculum...
WP_011015993  775 KDDVFTSIHIEEYEIDARTTKLGDEEITREIPNVSESALRNLDENGVIMIGSEVGPGDILVGKTAPKGETEPPAEEKLLR 854  Fusobacterium...
WP_011056489  678 QEDVYTSIHIEKYEIEARQTKLGPEEITREVPNVSEEALRQLDENGIIRIGAFVEAGDILVGKVTPKGESDQPPEEKLLR 757  Thermosynecho...
WP_011029792  729 QDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRIGAEVVAGDILVGKVTPKGETELTPEERLLR 808  Streptomyces ...
WP_010918390  830 RDDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVGEEALRNLDEAGIVAIGAEVQPGDILVGKVTPKGESPMTPEEKLLR 909  Caulobacter v...
3IYD_C        904 AIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDgvekdkraleieemqlkqakkdlseelqileaglfsriravlvagg 983  Escherichia c...
P37870        863 AIFGEKAREVRDTSLRVPHGGGGIIHDVKVFNRE---------------------------------------------- 896  Bacillus subt...
O84317        844 AIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKdrlsksddelveeavhlkdlqkeyksqlaqlkvehreklgalllne 923  Chlamydia tra...
O83269        872 SIFGEKAKEVRDSSLRVPHGVEGTVIDVQRLRRS---------------------------------------------- 905  Treponema pal...
P00575        904 AIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDgvekdkraleieemqlkqakkdlseelqileaglfsriravlvagg 983  Escherichia coli
WP_000037868  914 AIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKgyekdarvlsayeeekakldmehfdrltmlnreellrvssllsqai 993  Helicobacter ...
WP_005873809  871 AIFGDKAGDVKDASLKATPSLRGVVIDTKLFSKAakkksrtstkeavskldetyakrqqqlherlidklteltkgktccg 950  Porphyromonas...
WP_010931849  898 AIFGDKSSDVKDASMHVPAGMKGIVIKTKLFSRkkkigmdvkermeaidkqfdlkeadlrsrfakwmkqylngkksvait 977  Chlorobaculum...
WP_011015993  855 AIFGEKARDVRDTSLTMPHGSKGVVVDILELSRe---------------------------------------------- 888  Fusobacterium...
WP_011056489  758 AIFGEKARDVRDNSLRVPNGEKGRVVDVRVFTRE---------------------------------------------- 791  Thermosynecho...
WP_011029792  809 AIFGEKAREVRDTSLKVPHGEIGKVIGVRVFDRE---------------------------------------------- 842  Streptomyces ...
WP_010918390  910 AIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHgvdkderalaieraeidrlgkdrddefailnrnisgrlkelligkv 989  Caulobacter v...
3IYD_C        984 veae----------------------kldklprdrwlelgltdeekqnqleqlaeqydelkhefekkleakrrkitQGDD 1041 Escherichia c...
P37870        897 ----------------------------------------------------------------------------DGDE 900  Bacillus subt...
O84317        924 kapaaiihrrsadilvqegaifdqetiellereslvdllmapcdmydvlkdilssyetavqrlevnykteaehikeGDAD 1003 Chlamydia tra...
O83269        906 ----------------------------------------------------------------------------EGDD 909  Treponema pal...
P00575        984 veae----------------------kldklprdrwlelgltdeekqnqleqlaeqydelkhefekkleakrrkitQGDD 1041 Escherichia coli
WP_000037868  994 leepfshngkdyk----egdqipkeeiasinrftlaslvkkyskevqnhyeitknnfleqkkvlgeeheeklsileKDDI 1069 Helicobacter ...
WP_005873809  951 vkdylnvelika------gskfakkdlealdfnviqlsdwtndahtnelikavavnylkhskeieaelrrrkldetIGDE 1024 Porphyromonas...
WP_010931849  978 sdkgkvlvpegtv---ideallakfnglpflesidlskgivsgaktnenvvrlireyrlklkdlsderenekykinVGDE 1054 Chlorobaculum...
WP_011015993  889 ----------------------------------------------------------------------------NGDE 892  Fusobacterium...
WP_011056489  792 ----------------------------------------------------------------------------QGDE 795  Thermosynecho...
WP_011029792  843 ----------------------------------------------------------------------------EGDE 846  Streptomyces ...
WP_010918390  990 alsgpkglsr----------geitaeglaqvasglwwqialedekamgeleslrrlfdenrkrldrrfedkvdklqRGDE 1059 Caulobacter v...
3IYD_C       1042 LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 Escherichia c...
P37870        901 LPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISKILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHMGMAA 980  Bacillus subt...
O84317       1004 LDHGVIRQVKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPFLANGETVQMILNPLGVPSRMNLGQVLETHLGYAA 1083 Chlamydia tra...
O83269        910 LNPGVSEVVKVLIATKRKLREGDKMAGRHGNKGIVARILPEEDMPYLDDGTPLDVCLNPLGVPSRMNIGQILESELGLAG 989  Treponema pal...
P00575       1042 LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 Escherichia coli
WP_000037868 1070 LPNGVIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQILEMHLGLVG 1149 Helicobacter ...
WP_005873809 1025 LPAGIVQMAKVYIAKKRKIQVGDKMAGRHGNKGIVSKIVRQEDMPFLADGTPVDICLNPLGVPSRMNLGQIFEAVLAWAG 1104 Porphyromonas...
WP_010931849 1055 LPPGIEELAKVYIAQKRKIQVGDKMAGRHGNKGVVGKILPIEDMPFMEDGTPVDIVLNPLGVPSRMNIGQLYETSLGWAG 1134 Chlorobaculum...
WP_011015993  893 LKAGVNKSIRVLVAEKRKITVGDKMSGRHGNKGVVSRVLPAEDMPFLEDGTHLDVVLNPLGVPSRMNIGQVLEVHLGMAM 972  Fusobacterium...
WP_011056489  796 LPPGANMVVRVYVAQKRKIQVGDKMAGRHGNKGIISRILPVEDMPFLPDGRPVDIVLNPLGVPSRMNVGQVYECLLGWAG 875  Thermosynecho...
WP_011029792  847 LPPGVNQLVRVYVAQKRKITDGDKLAGRHGNKGVISKINPIEDMPFLEDGTPVDIILNPLAVPSRMNPGQVLEIHLGWLA 926  Streptomyces ...
WP_010918390 1060 LPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISRILPIEDMPFLADGTHVDVVLNPLGVPSRMNVGQIFETHLGWAC 1139 Caulobacter v...
3IYD_C       1122 KgigdkinamlkqqqevaklrefiqraydlgadvrqkvdlstfsdeevmrlaenlR-------------------KGMPI 1182 Escherichia c...
P37870        981 R------------------------------------------------------Y-------------------LGIHI 987  Bacillus subt...
O84317       1084 Kta-------------------------------------------------------------------------gIYV 1090 Chlamydia tra...
O83269        990 Lrl-------------------------------------------------------------------------dEWY 996  Treponema pal...
P00575       1122 KgigdkinamlkqqqevaklrefiqraydlgadvrqkvdlstfsdeevmrlaenlR-------------------KGMPI 1182 Escherichia coli
WP_000037868 1150 Kef---------------------------------------------------gKqiarmledktkdfakelraKMLEI 1178 Helicobacter ...
WP_005873809 1105 Rkm-------------------------------------------------------------------------nVKF 1111 Porphyromonas...
WP_010931849 1135 Kkl-------------------------------------------------------------------------gVKF 1141 Chlorobaculum...
WP_011015993  973 Rtl-----------------------------------------------------------------------ngGTCI 981  Fusobacterium...
WP_011056489  876 Aclgrrfk-----------------------------------------itpfdeM-------------------HGKEK 895  Thermosynecho...
WP_011029792  927 Srgwdvsglaeew------------------------------aqrlqvigadkvE-------------------PGTNV 957  Streptomyces ...
WP_010918390 1140 Anlgkqitnlledwqqggqkqalver----lteiygpdeelpdteeglvelarnlG-------------------KGVPI 1196 Caulobacter v...
3IYD_C       1183 ATPV----------FDGAKEAEIKEL--------------------------LKLGDLPTS--------GQIRLYDGRTG 1218 Escherichia c...
P37870        988 ASPV----------FDGAREEDVWET--------------------------LEEAGMSRD--------AKTVLYDGRTG 1023 Bacillus subt...
O84317       1091 KTPV----------FEGFPESRIWDM--------------------------MIEQGLPED--------GKSYLFDGKTG 1126 Chlamydia tra...
O83269        997 ESPV----------FQSPSNEQIGEK--------------------------LMQAGFPTN--------SKVMLRDGRTG 1032 Treponema pal...
P00575       1183 ATPV----------FDGAKEAEIKEL--------------------------LKLGDLPTS--------GQIRLYDGRTG 1218 Escherichia coli
WP_000037868 1179 ANAInekdpltihaLENCSDEELLEYakdwskgvkmaipvfegisqekfyklFELAKIAMD--------GKMDLYDGRTG 1250 Helicobacter ...
WP_005873809 1112 ATPI----------FDGASLNDMNEW--------------------------TDKAGLPRD--------GKTYLYDGGTG 1147 Porphyromonas...
WP_010931849 1142 KTPI----------FSGATYTEVQEY--------------------------LEKAGLPGH--------GKVKLFDGRTG 1177 Chlorobaculum...
WP_011015993  982 ATPV----------FDGATEEQVKDY--------------------------LEKQGYPRT--------GKVTLYDGRTG 1017 Fusobacterium...
WP_011056489  896 SRET----------VHAKLQEARDVT--------------------------GQDWVFNPEn------pGKMVVYDGRTG 933  Thermosynecho...
WP_011029792  958 ATPV----------FDGAREDELAGL--------------------------LQHTIPNRDgermvlpsGKARLFDGRSG 1001 Streptomyces ...
WP_010918390 1197 ATPV----------FDGARMDDIEGH--------------------------LEMAGVNKS--------GQSILFDGLTG 1232 Caulobacter v...
3IYD_C       1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Escherichia c...
P37870       1024 EPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDV 1103 Bacillus subt...
O84317       1127 ERFDSKVVVGYIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQEILTVKSDDV 1206 Chlamydia tra...
O83269       1033 DYFQNPVFVGVIYFMKLAHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAANTLQELLTIKSDDM 1112 Treponema pal...
P00575       1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 Escherichia coli
WP_000037868 1251 EKMRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTLKEMLTIKSDDI 1330 Helicobacter ...
WP_005873809 1148 ERFDQPATVGVTYFLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGASHILQEILTVKSDDV 1227 Porphyromonas...
WP_010931849 1178 EQFHDEVTVGYIYMLKLSHLVDDKIHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAANILREMLTVKSDDV 1257 Chlorobaculum...
WP_011015993 1018 EKFDNKVTVGIMYMLKLHHLVEDKMHARAIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGASNILQEMLTVKSDDI 1097 Fusobacterium...
WP_011056489  934 EPFDRPVTVGMAYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAYGAAYILQELLTVKSDDM 1013 Thermosynecho...
WP_011029792 1002 EPFPEPISVGYMYILKLHHLVDDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDV 1081 Streptomyces ...
WP_010918390 1233 EQFKRPVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1312 Caulobacter v...
3IYD_C       1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 Escherichia coli K-12
P37870       1104 VGRVKTYEAIVKGDNVPEPGVPESFKVLIKELQSLGMDVKI 1144 Bacillus subtilis subsp. subtilis str. 168
O84317       1207 SGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVRP 1247 Chlamydia trachomatis
O83269       1113 HGRSKIYEAIVKGEASSPTGIPESFNVLVQELRGLALDFTI 1153 Treponema pallidum subsp. pallidum str. Nichols
P00575       1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 Escherichia coli
WP_000037868 1331 RGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINI 1371 Helicobacter pylori
WP_005873809 1228 VGRSKAYEAIVKGDPMPTPGIPESLNVLLHELKGLGLSFSL 1268 Porphyromonas gingivalis
WP_010931849 1258 IGRNKTYEAIVKGQNLPEPGTPESFNVLIRELQGLGLEIRI 1298 Chlorobaculum tepidum
WP_011015993 1098 TGRTKTYEAIIKGEAMPESDLPESFKVLLKEFQALALDIEL 1138 Fusobacterium nucleatum
WP_011056489 1014 QGRNEALNAIVKGQSIPRPGTPESFKVLMRELQSLCLDISV 1054 Thermosynechococcus elongatus
WP_011029792 1082 TGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEV 1122 Streptomyces coelicolor
WP_010918390 1313 AGRTKVYESIVRGDDTFEAGIPESFNVLVKEMRSLGLNVEL 1353 Caulobacter vibrioides
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