Conserved Protein Domain Family
NuoD

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TIGR01962: NuoD 
NADH dehydrogenase I, D subunit
This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Statistics
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PSSM-Id: 273898
Aligned: 8 rows
Threshold Bit Score: 672.515
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P95178        37 ERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEK 116 Mycobacterium t...
Q9ZDH4         4 KTITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVES 83  Rickettsia prow...
P56908        18 KEVLLNLGPQHPSTHGVLRLVLQLDGEYVERVDPHIGYLHRGTEKLAESFTYTQIFPLTDRLDYLCPPSNNLAFALAVEK 97  Sinorhizobium m...
Q9RU89        16 ELMSLNVGPQHPSTHGVLRLVVDMDGEYVTRVEPHMGYLHTGFEKTMEHRTYQQNVTYAPRTDYLHSFSHELAYVLSVEK 95  Deinococcus rad...
Q9PM99        21 SKMIINLGPQHPSAHGNLRLILELDGEQVVKARPCIGYMHRGMEKMAENMIYQEFIPTTDRMDYIAASANNYAYCAAVEK 100 Campylobacter j...
P33599       210 DFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPYVLAVEK 289 Escherichia col...
WP_002224828   6 RNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEK 85  Neisseria menin...
WP_000068242  22 NQMILNFGPQHPSSHGQLRLILELEGEKIIKATPEIGYLHRGCEKLGENMTYNEYMPTTDRLDYTSSTSNNYAYAYAVET 101 Helicobacter py...
P95178       117 LLGitDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGVAQD 196 Mycobacterium t...
Q9ZDH4        84 LLE--CSVPRRAQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYERVSGSRMHSNYFRPGGVAED 161 Rickettsia prow...
P56908        98 LLG--IEAPIRAQYIRVMMAELARISGHLLITGALPMDLGAMTALLYAMREREMIMDLLEMITGARMHTSYCRVGGVRED 175 Sinorhizobium m...
Q9RU89        96 LLG--AEVPERANVVRVILHELGRIHSHLVFVGTGLLDLGALTPFFYAFREKEACQDLFEAVCGYRMNQGYFRVGGLARD 173 Deinococcus rad...
Q9PM99       101 LCG--LEIPRRAAVIRMILLELNRITSHLLWLATHALDIGAMSVFLYCFREREYVLDLIEKYCGARLTHSSMRIGGVMLD 178 Campylobacter j...
P33599       290 LAG--ITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHD 367 Escherichia col...
WP_002224828  86 LVG--IDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRD 163 Neisseria menin...
WP_000068242 102 LLN--LEIPRRAQVIRTILLELNRMISHIFFISVHALDVGAMSVFLYAFKTREYGLDLMEDYCGARLTHNAIRIGGVPLD 179 Helicobacter py...
P95178       197 LPP-------------------------NAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGITG 251 Mycobacterium t...
Q9ZDH4       162 LPE-------------------------NLLEDINKFIEQFPSKLNDIENLLNENRLWKQRLVDIGVVSQKDAMDWGFSG 216 Rickettsia prow...
P56908       176 LPD-------------------------GFLPKIREFCEIFPNRIRDYERLIENNRVFLSRTQGVGVISATDAIDLGLSG 230 Sinorhizobium m...
Q9RU89       174 LPE-------------------------GWTARVEAFLNQMERGVEEYTTLFAANPIFLDRAKGVGVIPADAALDLGLTG 228 Deinococcus rad...
Q9PM99       179 LPE-------------------------NYLEEMLAFCDKFPNDLKDYEDLLDDNRIWRLRTENVGVVTKEQALNWGCTG 233 Campylobacter j...
P33599       368 LPR-------------------------GWDRLLREFLDWMPKRLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTG 422 Escherichia col...
WP_002224828 164 LPDfmpkyegskfrnakvlkqlnesregTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243 Neisseria menin...
WP_000068242 180 LPP-------------------------NWLEGLKKFLGEMRECKKLIQGLLDKNRIWRMRLENVGVVTQKMAQSWGMSG 234 Helicobacter py...
P95178       252 PILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSC-DAYGRYMIRVKEMWESMKIVEQCLDKLRp--GPTMISDRKLAWPA 328 Mycobacterium t...
Q9ZDH4       217 PMLRGSGIAWDLRKSNPYDVYDEMDFEVPIGKNG-DCYDRYLVRILEMYESIKIIKQCIVKMPk--GQVKTDDPKLTPPT 293 Rickettsia prow...
P56908       231 PNLRASGVDWDIRRDEPYEIYDRLDFDVITREEG-DCYSRWLCRVDEMRESIRLIEQCMEQMPe--GPFQVDIPTIAFPV 307 Sinorhizobium m...
Q9RU89       229 PNLRASGVPLDNRKDHPYCGFEDYDFNVISSPDG-DSLARFNMRLLEFSESIKIIRQGLQKLRp--GPIKDPNRKISLPP 305 Deinococcus rad...
Q9PM99       234 VMLRGSGIKYDIRKEEPYLLYNEVEFGVPYATQG-DSYARYKVYMQEFRESLKILRQCAMLYKdtsPEILATHPEYVSAS 312 Campylobacter j...
P33599       423 AGLRATGIDFDVRKARPYSGYENFDFEIPVGGGVsDCYTRVMLKVEELRQSLRILEQCLNNMPe--GPFKADHPLTTPPP 500 Escherichia col...
WP_002224828 244 VMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVNG-DCYDRYLCRMEEMRQSVRIIKQCSEWLRvnpGPVITTNHKFAPPK 322 Neisseria menin...
WP_000068242 235 IMLRGTGIAYDIRKEEPYELYKELDFDVPVGNYG-DSYDRYCLYMLEIDESVRIIEQLIPMYAktdTPIMAQNPHYISAP 313 Helicobacter py...
P95178       329 dlqvgpdglgnspkhiAKIMGSSMEALIHHFKLVTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTN 408 Mycobacterium t...
Q9ZDH4       294 ----------------RGKMKESMEAMIHHFKLYTEGYDVPIGETYKAVEAPKGEFGVYLYSQGGNKPYRCRIKAPGFAH 357 Rickettsia prow...
P56908       308 d---------------KERVHCSMEALIQHFDLSAYGFDVPAGEVYSVIEAPKGELGFYIISDGSPKPFRMKVRAPSFVN 372 Sinorhizobium m...
Q9RU89       306 r----------------HELETSMEAVIHHFKLVTEGFHPPLGEAYVPIESARGEVGYYVISDGGSMPYRVKIRAPSFVN 369 Deinococcus rad...
Q9PM99       313 ----------------KEQILTQNYSLMQHFVLITQGLKPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSYWH 376 Campylobacter j...
P33599       501 ----------------KERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPSFAH 564 Escherichia col...
WP_002224828 323 ----------------RTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAH 386 Neisseria menin...
WP_000068242 314 ----------------KEDIMTQNYALMQHFVLVAQGMRPPVGEVYAPTESPKGELGFFIHSEGEPYPHRLKIRAPSFYH 377 Helicobacter py...
P95178       409 LQSVAAMCEGGMVADLIAAVASIDPVMGGVDR 440 Mycobacterium tuberculosis
Q9ZDH4       358 LQGLNFMSKGHLIADVITIIATLDIVFGEIDR 389 Rickettsia prowazekii str. Madrid E
P56908       373 LQALFGVTNARYLADMIAVLGSLDPVMAEVDK 404 Sinorhizobium meliloti 1021
Q9RU89       370 LQALEYACVGVQFADLITILATIDPVLGDVDR 401 Deinococcus radiodurans R1
Q9PM99       377 CAFFEEMLVGTYLADVVAIMGNVNIVLGEIDR 408 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
P33599       565 LQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 596 Escherichia coli K-12
WP_002224828 387 LQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418 Neisseria meningitidis
WP_000068242 378 IGALSDILVGQYLADAVTVIGSTNAVFGEVDR 409 Helicobacter pylori
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