1HH2,1K0R


Conserved Protein Domain Family
NusA

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TIGR01953: NusA 
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transcription termination factor NusA
This model describes NusA, or N utilization substance protein A, a bacterial transcription termination factor. It binds to RNA polymerase alpha subunit and promotes termination at certain RNA hairpin structures. It is named for the interaction in E. coli of phage lambda antitermination protein N with the N-utilization substance, consisting of NusA, NusB, NusE (ribosomal protein S10), and nusG. This model represents a region of NusA shared in all bacterial forms, and including an S1 (pfam00575) and a KH (pfam00013) RNA binding domains. Proteobacterial forms have an additional C-terminal region, not included in this model, with two repeats of 50-residue domain rich in acidic amino acids. [Transcription, Transcription factors]
Statistics
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PSSM-Id: 273893
Aligned: 17 rows
Threshold Bit Score: 376.982
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1HH2_P         4 GLLEALDQLEEEK---GISKEEVIPILEKALVSAYRKNF----GNsKNVEVVIDRNTGNIKVYQLlev--veEVEDPAtq 74  Thermotoga mari...
O51740         4 GTGHMIVNIANDR---GMSIDSIRKTIKESVLIAYKKYF----GSnENAFIKFDDDTGDLSVYAKkki--vkEVKDSLle 74  Borrelia burgdo...
P47387        32 PLLAIIKNVAKTK---NLSIEEVVFCLKTALEQAYKKHL----NF-VNVEVNINFDKGIINVEQLfnvvsdeNEDyddfl 103 Mycoplasma geni...
WP_010888432  11 NFAEALREVAQAR---NINELQLIEAFEQSLQQAYVRNV----EPdKRIEVHLDPQSGVLEVLIVrev--veKVEDEHmq 81  Deinococcus rad...
WP_010965105   4 EFIQALKEIVEEK---GISEELLFSTIEDALVAAYKKNYakltENvHNVRVSMNRENGEIHVYSQkkv--vqEIEDSIce 78  Clostridium ace...
WP_010905552   4 EMLNAFAMLEEQK---GIKSEIVIEAIEQAITAAYKRQY----GQaQNVKVIFDEKKGNFNVYSTrev--vdEVFDSRle 74  Lactococcus lactis
WP_010882335   4 vsNDDIRKYAQEK---GLDEDFAFKIVEQTLKAAYKTTF----KTdENAVVTFGEER--VCIYARkrv--veEVYDRVse 72  Treponema pallidum
WP_010882964   4 NLVAIFDYMEKEK---GIQRSTIIGAIESALKIAAKKTL----RDdANISVNINSRTGDIEVFCEkei--veICQNPSke 74  Chlamydia pneum...
WP_013815478   6 ETISMIESLAEFKelkNIDKETMINVLEDSFRNVLAKIF----GSdDNFDVIINPEKGDFEIWRTrqvvedgAVEDESre 81  Porphyromonas g...
WP_002858478   3 KIADIIESIANEK---NLNLENVREKVATALINTAKRIY----GQe--YEFFVDPKNLNLYQKITivadndeRLQNKSes 73  Campylobacter j...
1HH2_P        75 -iSLEEAKKIDPlaevgsivkkelnvKNFGRIAAQTAKQVLIQRIRELEKEKQFEKYSELKGTVTTAEVIR--VMGEWa- 150 Thermotoga mari...
O51740        75 --iLEKDISKENivegdya-yieinpKVFDRLSIQVAKQRTKNDLQGIEDNEILSEFKSKLNKVVIGYVQQ---NRNGdl 148 Borrelia burgdo...
P47387       104 eiPLQAANKINSslqlgdvlrkpiplKNISSDLINKMIAIFNQKISETNFKAVMSEFSSEVGEVIEAKVEDidTNKEGgl 183 Mycoplasma geni...
WP_010888432  82 -iSLADALELDPgveigmemefpvdqEMFSRIALQAAKQTLTQKMRETERNVVFNEYKDREGQVLNAQVVR--SDNKGnw 158 Deinococcus rad...
WP_010965105  79 -iSLDDAKSIDPkyqlddivdieitpKSFGRVAAQAAKQVVIQRIKEAERSLLYDEFSEKEFDIITGTVLR--KDK-Gni 154 Clostridium ace...
WP_010905552  75 -iSLEDAHELNPhyeigdkimfeekpKDFARTAAGAAKQVIMQKMREEERTIIYNEYSRYKDEIIQGTVEK--VDARa-v 150 Lactococcus lactis
WP_010882335  73 -vDLSTALELDPttsldsevlvelesEDFKRGSVQAAVQRITELSREIQKDALYAEYKSKEGEIIVGYYQR---ARNEhi 148 Treponema pallidum
WP_010882964  75 -iPLDKAREYDPdcqigqymdvpfvsDNFGRIAAHAARQIIGQKLRHAERDVIYEEYRHRVNETLSGVVKR--FAKGSnl 151 Chlamydia pneum...
WP_013815478  82 -vSLSDAHEIDPeaevgeevtdsvnfASFGRRAILNLRQALSSKIMELQKENLFNTFTERIGQLISAEVYQ--VWKREal 158 Porphyromonas g...
WP_002858478  74 fiALSKAKSEAPdveigdeltyecslENLGRTAVNTLHKELEYHIQKLLEQTIFEKYKNKVGQMVFGTVVR--VDNEEnt 151 Campylobacter j...
1HH2_P       151 DIRI---GKLETRLPKKEWIPGEEIKAGDLVKVYIIDVVKTTKg--PKILVSRRVPEFVIGLMKLEIPEVENGIVEIKAI 225 Thermotoga mari...
O51740       149 YVNL---GNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKNg--IEVILSRTHPKFIEELLALEIPEIEEGIIKIHKI 223 Borrelia burgdo...
P47387       184 KGYIinlETTKGYISKRELSKGERLEIGKKYLFVIKEIQRQASl--WPITLSRSDTRLLQFLLTSNTPEIENGTIVIKKI 261 Mycoplasma geni...
WP_010888432 159 FVEL---GAGEAILPPREQIPGEKLTPGGRVKIYLKEVRKTPKg--PTILASRADERLLDYLLKQEIPEVANGIVEVKAI 233 Deinococcus rad...
WP_010965105 155 LIDL---GRIEAILGPSEQIPGEDYIYNSKIKLYIVEVKNTTKg--AQVVISRTHPGLVKRLFELEVPEIYNGIVEIKGI 229 Clostridium ace...
WP_010905552 151 YVNL---GRVDALLTKKDQIPQENFHVGDRVKVYVTDVVLTPKg--TRVFISRTAPDMLKRMFEKEIPEVFDGTVEIKSI 225 Lactococcus lactis
WP_010882335 149 YVDL---GKVEGLMPKSHQLPQDDYRQNDRIKSLVREVRKHPKssvVQLILSRTDSAFVKELLAVEVPEIYDGIVEVAKI 225 Treponema pallidum
WP_010882964 152 IIDL---GKVEAILPTRFYPKTEKHKIGDKIYALLYEVQESENg-gAEVILSRSHAEFVKQLFIQEVPELEEGSVEIVKI 227 Chlamydia pneum...
WP_013815478 159 LIDD---DGNELLMPKSEQIPSDFFRKGETVHAVVERVENANNn--PKIIVSRTSGEFLKRLFELNVPEIADGLITIRCV 233 Porphyromonas g...
WP_002858478 152 FIEI---DELRAFLPRKNRIKGEKFKIGDVVKAVIRRVYTD-Kg--IKIELSRTSPKFLECLLEAEVPEIKDGYVNIIGC 225 Campylobacter j...
1HH2_P       226 AREPGVRTKVAVASNDPNVDPIGACIGEGGSRIAAILKELKGEKLDVLKWSDDPKQLIANALAPATVIEVeILDKEN--K 303 Thermotoga mari...
O51740       224 VRDPGYRIKVAVYSEKEEIDPVGPCIGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVyILDEDL--H 301 Borrelia burgdo...
P47387       262 ERSPGVKSKIAVISNDPAVDPVAAILGPKGEKIRGISEEFNGEIIDIVFWNEDKLKFLINAILPAEVIGYnILQDDErdT 341 Mycoplasma geni...
WP_010888432 234 AREAGQRSKVAVFSHNSNVDPIGACIGHRGNRIQAVTGELGRERVDVILWDANTREFIRNALSPAKVGPIeVQ-QDS--R 310 Deinococcus rad...
WP_010965105 230 SREAGSRTKIAVYSHDENVDAMGACVGPKGMRVQNIVNELKNEKIDIIKWSKLPEEFISNSLSPAKVLDVyI-DEDT--K 306 Clostridium ace...
WP_010905552 226 ARDAGDRAKVIVQSHDENVDAIGTMVGTKGSRIQGIIRELAGEKMDIIEWSEDKATLVANALKPARIEQVlITAD----G 301 Lactococcus lactis
WP_010882335 226 VREPGYRTKIAVTSRRDDVDPVGACVGPRGIRIRMVIKELNDEKIDVLEYSPDPVIFIKNALSPAEVLNVvVLDEEK--R 303 Treponema pallidum
WP_010882964 228 AREAGYRTKLAVRSSDPKTDPVGAFVGMRGSRVKNIIRELNDEKIDIVNYSPVSTELLQNLLYPIEIQKIaILEDD---K 304 Chlamydia pneum...
WP_013815478 234 ARIPGERAKMAVESYDDRIDPVGACVGMNGSRIRGIVRELRGENIDVTQYTTNTALFIQRALSPARISSIrLLEAE---H 310 Porphyromonas g...
WP_002858478 226 ARIPGERAKIILQANGTNIDPVGATVGVKGVRINAVSKELHNENIDCIEFTNESEILISRALAPAIVNSVkIED-----K 300 Campylobacter j...
1HH2_P       304 AARVLVPPTQLSLAIGKGGQNARLAAKLTGWK-IDIKPIMN 343 Thermotoga maritima
O51740       302 KALVVVSDDQLSLAIGKMGQNVRLANRLLDWA-IDVKTSSQ 341 Borrelia burgdorferi B31
P47387       342 SIEVVVPANQIANVFGFKGVNIRLISNLTGWNsVDVYSEKD 382 Mycoplasma genitalium G37
WP_010888432 311 DATVTVTPDQLSLAIGKGGQNVRLAAKLTGFK-IDLRETAa 350 Deinococcus radiodurans
WP_010965105 307 SARAIVEDNQLSLAIGKEGQNVRLAAKLTEWK-IDIKSKSQ 346 Clostridium acetobutylicum
WP_010905552 302 SSLAVVARDQLSLAIGKRGQNVRLAAHVTNSK-IDIKAADE 341 Lactococcus lactis
WP_010882335 304 SALAIVAESQLSIAIGKQGLNVRLANRLVDWN-IDVKTESQ 343 Treponema pallidum
WP_010882964 305 VIAIVVNDADYATVIGKRGINARLISHILDYE-LEVQRMSE 344 Chlamydia pneumoniae
WP_013815478 311 KAEVFLRPEEVPLAIGKNASNIKLASGLTGYQ-IEVFRdid 350 Porphyromonas gingivalis
WP_002858478 301 KAIVSLNSEQKSKAIGKNGINIRLASMLSGYE-IELNELSS 340 Campylobacter jejuni
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