Conserved Protein Domain Family
cas_Csa4

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TIGR01914: cas_Csa4 
CRISPR-associated protein Cas8a2/Csa4, subtype I-A/APERN
CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats. The species range for this species, so far, is exclusively archaeal. It is found so far in only four different species, and includes two tandem genes in Pyrococcus furiosus DSM 3638. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa4, for CRISPR/Cas Subtype Protein 4.
Statistics
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PSSM-Id: 273872
Aligned: 5 rows
Threshold Bit Score: 428.465
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q57830        24 VMLFETPGYNEILDLYIAYGVVECLVREGVENLRFFPIGNKYCIVVEEPTnvn------ikN--------RIEKGMLNAL 89  Methanocaldococ...
WP_011011757   3 FNEFKTPQIDPIFDLYVAYGYVESLIRGGAKEATLIPHGASYLIQTDVSN-----------E--------EFRHGLVDAL 63  Pyrococcus furi...
WP_011007097   2 LKEIYTPGHDVFADTLIMHGVVRHLAASGIVEGYVERLGERYKISFEGEPral-----adiE--------SVELLLFEIE 68  Pyrobaculum aer...
WP_011011758   5 VPMFSG-YYSRVLNTHIMYGIVESALRAGVTNLHVVPTGEGYEIHSRYLDcrl-----knqEdlegegckLLLEGLRDAL 78  Pyrococcus furi...
WP_010866244   2 VCILYTPGHNLYTDTLILYGIARLLAWSGKVSGEVERVGERYVVKVDADNchpvsqlpesiR--------LALRLLQEEQ 73  Aeropyrum pernix
Q57830        90 EDMLSLHKAIGKy------ISTKEDIKIISDVDFSAGANINN-VYWDGIPKTLEKIKENIKKG-Kl------STKSKNTV 155 Methanocaldococ...
WP_011011757  64 SEMLSLHIALAR-------HSPREGGKLVSDADFSAGANINN-VYWDSVPRNLEKVMKDLEKK-R-------SVKGTATI 127 Pyrococcus furi...
WP_011007097  69 RYVVDGEEPVGRl------RKIFDANINISATRSWLAQLSEAlVNAELSVFTLDHKAKFREG--Rt------ASRRLSTV 134 Pyrobaculum aer...
WP_011011758  79 EEIIMTHYAMGf-------RSKKFNNVILSNTVISNGAFIDPpQNVQRYYRELEAILNNLDIK-SlkstkslIDKKVLRA 150 Pyrococcus furi...
WP_010866244  74 QQVFLGDEGTFYsdlyrlaRGSKVGESILNNLRIRVAAKILS-NDANILEKYVSPGHKKLQGEfRg------RKKGLVTL 146 Aeropyrum pernix
Q57830       156 PLTLMPAAGKYMPKIYGVK--GGNPIKIDDSNYALAWIGFHYYAPYINISDNRATYIHIYAIKPLEELGLIEILALKDLK 233 Methanocaldococ...
WP_011011757 128 PITLMPSAGKYMLKHFGVQ--GGNPIKVDLLNYALAWVGFHYYTPYIKYAKGDTTWIHIYQIAPVEEVDMISILSLKDLK 205 Pyrococcus furi...
WP_011007097 135 YLTLSPIYGKYFIENRVAK--ENKAFGVCHTCFAYLNIGFLYGATTIVIITRDGRRVVQLTPAPRGRISIADLALLQRLT 212 Pyrobaculum aer...
WP_011011758 151 PQQLDPTLNQWLSFYKQEE--GIS--RITNLEYALAWVGFYYYSSVHKFKRGSSQIVEIIQYPPNEEVEMWELLLIKDLA 226 Pyrococcus furi...
WP_010866244 147 VLPLGPLYGKFYTWSLKPRrlTEKPYVVCPYCYFLSVLGFHYGS--YTYQKDGESKVVTLSPHHASLEDVLALSQSFEAA 224 Aeropyrum pernix
Q57830       234 KKINNYQLGKYKFFVNKKLALLYHLTHTESISALEIVT-KKNFSVVSYTLENVDNNQAIRSFGEYDLSKLMDFLWYLKAT 312 Methanocaldococ...
WP_011011757 206 MHLPHYYESNLDFLINRRLALLYHLLHSESLGALELFT-EKEFVIHSYTLERSGNNQAIRSFEEEEIGKLMDFLWKLKRR 284 Pyrococcus furi...
WP_011007097 213 EGYLVR---------SQEMPTLAYPLYWLSTGETLYAT-EESLDILVWVTEKRGNFQRVTDAMALDLSRIMEFIAEVKN- 281 Pyrobaculum aer...
WP_011011758 227 TKIVQ--GNDFHWKISSEYGLLKTLLLTELPPSTEEVPgLSKFTVVIYGQE-SQQGKGWRIFRTLELPVVWDFIGYLKAR 303 Pyrococcus furi...
WP_010866244 225 SIWMPAILR-----YRNSLTGPGLSLYVLSLGETLLSS-SSHFEVLYGEFSVDNNTFRVVDVGRLP-GVLLTSIAIIKY- 296 Aeropyrum pernix
Q57830       313 DFYNTIQFVDNILRGD-----------L--EVSLTFIDGILYDDLDAVYSAIR--------KLKS-VRISPLIIQSILEW 370 Methanocaldococ...
WP_011011757 285 DFYHAIKFIDDLLKKA-----------T--EGALALIDAIMNERLEGFYTALKl------gKKAG-VVSSREIVAALEDI 344 Pyrococcus furi...
WP_011007097 282 KTRGWPKFVECLALEG-----------P--EILAQLTEVVLFGGDE--YTVVRa------lSTSGkCAEDWRQVDILAEI 340 Pyrobaculum aer...
WP_011011758 304 AFYETMKFVKILNKLErtikesqedilR--EISHQLYSALTNRDEMGFYSAFRv------lKRAG-YPLDPELVNAIAQY 374 Pyrococcus furi...
WP_010866244 297 HMASWPRLIDFIARRD-----------PglLHRIALTLSFEVGNEYALYGILReilsllndDKSQeARYLAKQLDRLAEG 365 Aeropyrum pernix
Q57830       371 FGNF 374 Methanocaldococcus jannaschii DSM 2661
WP_011011757 345 ICER 348 Pyrococcus furiosus
WP_011007097 341 LFTW 344 Pyrobaculum aerophilum
WP_011011758 375 LSER 378 Pyrococcus furiosus
WP_010866244 366 LAMV 369 Aeropyrum pernix
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