Conserved Protein Domain Family
cas5_csm4

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TIGR01903: cas5_csm4 
CRISPR type III-A/MTUBE-associated RAMP protein Csm4
CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm4, for CRISPR/cas Subtype Mtube, protein 4.
Statistics
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PSSM-Id: 273866
Aligned: 7 rows
Threshold Bit Score: 260.443
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
O27151         2 LVYLKPESSLPP-------------LSSDTIFGALIYSFSQLYP-DEVDEVVDQFMEdppFLISSSFPYiEtdeRLRFYP 67  Methanothermoba...
Q97CJ3         3 LFKISFKSSSSY-------------VDSIKISRAIIYAYNTLYP-DKIDDLINKVKDs-yVSVSDLLLY-K---NKVYYP 63  Thermoplasma vo...
WP_011021930   7 IVKLDFTSPLHIgevgigleenslvLHSDTIFNAICNSLAKLYGrEWVTKFLQNFSEnvpFRISSGFPFiK---ETLYFP 83  Methanosarcina ...
WP_004082355   7 LVKMSFRSGFRVgr----------gNETDSTLPTIHSDTIYGAVvYHAFKWSEKAEDfakKLKVSSLLFvRg--DRLLVP 74  Thermotoga mari...
WP_003414288   5 LFRFDFDRTHFGdhgle---sstisCPADTLYSALCVEALRMGG----QQLLGELVAcstLRLTDLLPYvG---PDYLVP 74  Mycobacterium t...
WP_010871192   5 VLKPKINSKFHFgegsle--rnskiFHSNSLFSAIVNNYIKLYGrEDLEKNIEKIKN---IRLSSLLYKiK---NIYLIP 76  Methanocaldococ...
BAA29235       1 MVKLKPKGPFTr------------iPRATTIFGAISNAIRLLYGrKEVEKFIAGFINd-dAKITSAFPYdG---ETYFLP 64  Pyrococcus hori...
O27151        68 RIITEPGSYDPILFK---K-YKGVS---YIPEGLFLEWASGEADEEHIVNSMEKNRVYGGllidg--------------- 125 Methanothermoba...
Q97CJ3        64 FPPINALIDVNNTESi-kNrKKRSE---FIDIDELSSIVEAFKETGYQGVNYSKIKHEGNgd------------------ 121 Thermoplasma vo...
WP_011021930  84 KPMNQANIEENLLQDy-sKkLKKTT---YLTQKFFEKWIAEERLFKKDLNAITESKTTKSedseelsktdineikdnknt 159 Methanosarcina ...
WP_004082355  75 KPFLYNTYSLEEDDEespKeLKKAS---YVFLDKLADYRSIKEASGAVCk------------------------------ 121 Thermotoga mari...
WP_003414288  75 KPLHSVRSDGSSMQK---KlAKKIG---FLPAAQLGSFLDGTADLKELAARQTKIG------------------------ 124 Mycobacterium t...
WP_010871192  77 KPEHPEFYKLKGNPGikpKdIKKIQ---FFSIKAYKELLDNELDWKNKIKHIVDYQTINKsivisekeieeikrifgika 153 Methanocaldococ...
BAA29235      65 KPLSVDLVVKTLFETk-kEdVKKVKkkdYIPLESFEKALRLEEFEVKEL------------------------------- 112 Pyrococcus hori...
O27151       126 ---dkdiRFG-EVEFEEPHNVVNRI-------ERRTEGVFHLRRVFYENMGRFFLVKFRDa--SFRSRLESALRFLADRG 192 Methanothermoba...
Q97CJ3       122 -----nkGKPhKILISEPGINIFQTp------EIKDNKYKYNDIFTKELFIYDESCFYAR---NSDKNIEATINLLNDFG 187 Thermoplasma vo...
WP_011021930 160 avrgdifSEF-KKDLLLPKVSVSRE-------NAESSIYFLGSIRFNEDSGIWFILDCDDe--DCEKKVISALRLLQHDG 229 Methanosarcina ...
WP_004082355 122 -------ENP-VEIVRIPRNSLDRI-------TSSSNLYFVEVAFVKEGFTPAFLAEFPDe---YEGLFKTAVKSLGDSG 183 Thermotoga mari...
WP_003414288 125 ------------VHAVSAKAAIHNG-------KKDADPYRVGYFRFELDAGLWLLATGSe---SELGLLTRLLKGIS--A 180 Mycobacterium t...
WP_010871192 154 eklkhakISL-ISKHLEQKVAIDRLkditlekDDKGQLYNIEFIKLNENVEFYFLIDYNNedkEFIKKLEASIKLIEDEG 232 Methanocaldococ...
BAA29235     113 ---------P-YKVIELPKVSLDRV-------SNDSSLYFWDLVTFKENSGLYFLYDGSNk--LFEKYIVPAMRLLEDQG 173 Pyrococcus hori...
O27151       193 LGPDVSTGKGTFS-FEFDR-----N-PLPEYTGER-FVTLSRFIPAPSELE-SVTRDAWFELGSRRGRGPDG-------- 255 Methanothermoba...
Q97CJ3       188 LSGRRSTGKGEVYiEKIND-----N-FNEGFNGEGiYILLSSFIPDNDYIKnIDFERSRYNIKTLQGKNING-------- 253 Thermoplasma vo...
WP_011021930 230 IGGKRTWGYGNFS-MEVKN-----I-ELKVPDSKT-YLLLSLFYPKDDENE-NESGLFSSER-ARWGFSLRGgyaypygs 299 Methanosarcina ...
WP_004082355 184 IGADSTYGYGLFN-AEFES-----A-PDFPEEGEY-YLTLSLFVPSAEE-R-SKMNEGYYRVVKRRGVKRDEm------- 246 Thermotoga mari...
WP_003414288 181 LGGERTSGFGAFNlTESEA-----PaALTPTVDAAsLMTLTTSLPTDDELE-AALAGATYRLVKRSGFVASStya----- 249 Mycobacterium t...
WP_010871192 233 LGGKRSIGAGFFEkVEIVDlpedfN-EILDENSKYnNLEYKMLLGVGIPNK-DDIKNIEYYKLIEIGGYIYSlec----- 305 Methanocaldococ...
BAA29235     174 IGGKGTWGYGLFE-VEIEE-----L-EIEEPRENS-YVTLSPFVP-----E-NETSLILWKIVKL-GGWSQG-------- 230 Pyrococcus hori...
O27151       256 ---EIRKQVRFFREGSTFNDT--GKEYYGTLVRSg-R-------------SAVEYGLAYKFM 298 Methanothermobacter thermautotrop...
Q97CJ3       254 ---NPIGPFRYFAPGSIFYLK--GDVKGVSFIEN--N-------------GIIPFNPVITKV 295 Thermoplasma volcanium
WP_011021930 300 kssFHKPQRLFIKEGSIFEKApkGKLIKDATNLDglE-------------KLYHYGLAYSIP 348 Methanosarcina acetivorans
WP_004082355 247 ---KVKKEISYVQEGSVFPFKpeGRGVLKIEDYFvqT-------------SPLCVAFGGDGK 292 Thermotoga maritima
WP_003414288 250 dmpLRKRDIYKFAAGSVFSRPfqGGILDVSLGGN--H-------------PVYSYARPLFLA 296 Mycobacterium tuberculosis complex
WP_010871192 306 -ltKPKRNILALTEGSIVKNDfiGDVKDISPQNDddEqnknnennnklnhKVYTHGKPILLP 366 Methanocaldococcus jannaschii
BAA29235     231 ---KRRPKIPMVVEGSLSREDr-GKMITLDLSLSypV-------------YVYARSFLVRAS 275 Pyrococcus horikoshii OT3
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