Conserved Protein Domain Family
cas_TM1807_csm5
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TIGR01899: cas_TM1807_csm5 
CRISPR type III-A/MTUBE-associated RAMP protein Csm5
CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm5, for CRISPR/cas Subtype Mtube, protein 5.
Links
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Statistics
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PSSM-Id: 273863
Aligned: 7 rows
Threshold Bit Score: 324.803
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
WP_011021931   3 CKIELLSPLHIGNGNE-----------LKMVDFYLN-EkkDEIRFIDFEKFIDYCIEKRINLNQEMKNPRYYTGSDFSIS 70  Methanosarcina ...
WP_010884276  17 AMFEVLTPLHIGNGNE-----------LTPVDFYPL-G--DRIIVLDTEKLINDLLRLGVEVEELLDFLRNPPGSLYLWR 82  Pyrococcus hori...
WP_003414285  10 LTLRCLGPVFIGSGEK-----------RTSKEYHVE-G--DRVYFPDMELLYADIPAHKRKSFEAFVMNTDGAQATAPLK 75  Mycobacterium t...
WP_004082354   3 VTLKTLTPLHIGSGEKyp--------pCNLVVLKEE-En-KKTAVRLITRKFLEVLRKHPEIKQNISENISKPLSFKEVE 72  Thermotoga
WP_010871191  48 VKCELITPIFIGCGEE-----------YSQLDYFIE-DglAHIIDLEKAVSDLDDLEKVDYISGLIVSNIDNNRLNLTAK 115 Methanocaldococ...
WP_010916364   3 VQLKVSSPVLIGNDYVnvtnmiinkdsLYMLDMDKLiDn-EPKIDQLAEYFLSYKSSDKDEYSKYNEIKRFYNNINAENY 81  Thermoplasma vo...
WP_011019687   9 VRLEVLTPLHVGVPREee--------lVRGLDYRVD-Gn--RILVVDFTTLPPERAERVLGALEGGD--HAEAEGYLEGA 75  Methanopyrus ka...

WP_011021931  71 KFMD--AKQIDPNTFTSYAVSaIIGKRNRE----------SeFAIKEFVKCGG-----P----YLPGSSIKGSIRTALMW 129 Methanosarcina ...
WP_010884276  83 GYLE--KLHLDPRNYARYSLR-IRGELGRE----------S-SRIKEFIKIKGk----P----YIPGTSLKGAIRTAVLY 140 Pyrococcus hori...
WP_003414285  76 EWVEpnAVKLDPAKHRGYEVKiGSIEPRRAsrgrggrmtrKkLTLNEIHAFIKd----PlgrpYVPGSTVKGMLRSIYLQ 151 Mycobacterium t...
WP_004082354  73 NVED--GVFYEVSLYSDFSSG-------KK----------NpEIPEVVHHPDGs----V----YVPGSSLKGAVRLALTW 125 Thermotoga
WP_010871191 116 DILE--SVGLNPYDYVIRKIEs---EIFSN----------KkTRVKKFINQNNt----Y----YIPGSSIKGAIRTAYIF 172 Methanocaldococ...
WP_010916364  82 KIEP--EIKGDKEFYEVINSNdNKFLKAKD----------VkLTMGTYEVINNkktfvP----FIPGSTIKGAIRNAIRN 145 Thermoplasma vo...
WP_011019687  76 EVLR--EVELRTGGVPDRFLP-----TYRP----------TrV---------Dd----P----WIPGTSVKGALRTGLLL 121 Methanopyrus ka...

WP_011021931 130 NCLNER-P----DGMEIV----------------------QN--------------G-----LQKWLDKSRIAARDLKML 163 Methanosarcina ...
WP_010884276 141 KVLKDC-G----DVPTVVealgkygkttgniiraithpgnQD--------------L-----LDYYLFYLGRGNVRGKQA 196 Pyrococcus hori...
WP_003414285 152 SLVHKR-T----AQPVRV----------------------PG--------------H-----QTREHRQYGERFERKELR 185 Mycobacterium t...
WP_004082354 126 HVLRNN-R----NLLEEF----------------------RR--------------N-----VQKDLQNHKRAFYQTNEF 159 Thermotoga
WP_010871191 173 NYYDKNlP----ELLKIL----------------------DD-------------------------RNIKLHDKGKELE 201 Methanocaldococ...
WP_010916364 146 EYIKKN-K-----INITY----------------------DD--------------HkkvksYNFNGNSYGDLDEAIFYK 183 Thermoplasma vo...
WP_011019687 122 AALKRL-DglgtDLSTLT----------------------DRlprnpkkaavaldnR-----LRATVFQGGTARRSYRRK 173 Methanopyrus ka...

WP_011021931 164 DENISEVIFg--------KDPRSDILRVLKPSDTNLVSK--SRLEVSEIKIVGNSQe--IP--VYVENLKTGTELSFDVA 229 Methanosarcina ...
WP_010884276 197 DDILEAIVFgfeaerrfrYEPKRDPMKALIVRDSRLIPL--DNLSVYEVRVVGWGSs--IP--IWVEALDPGTRFEAEVK 270 Pyrococcus hori...
WP_003414285 186 KSGRPNTRP---------QDAVNDLFQAIRVTDSPALRTs-DLLICQKMDMNVHGKpdgLP--LFRECLAPGTSISHRVV 253 Mycobacterium t...
WP_004082354 160 LNGLFRFAP---------KEINTDYFRFLRVSDSQTLRT---QLVVHDVGIFYVARpntHPrtFPLEFVPINRDFVFDVR 227 Thermotoga
WP_010871191 202 KNAISKDIP---------K----DFFKYLKISDSLNLEG--EFKFIHTKRWNYRKKkfdVP--INMEGMTKG-TFSINIK 263 Methanocaldococ...
WP_010916364 184 EDQKRQNEP---------KKISNDVFRFVEVDDFYPKEYslKIYRIERIKLSNNKRn-gIP--FYAISIDSG-TFTGNIK 250 Thermoplasma vo...
WP_011019687 174 PNRGWPEVF-----------PHADVLRALKVEDARPVGK--IRTAVYRAELHPKGR----P--LDAREFVVSGTFELELG 234 Methanopyrus ka...

WP_011021931 230 FDNYLITQDQNepkfknhpcvRYMNVQAICKACnefskkviEKHLEYLWeny-----ncdEAAEEFDSLWNKVLSCNgNE 304 Methanosarcina ...
WP_010884276 271 VDRELLRIGSD----------YFNGLLWHCLAG--------EDFEEFVW-----------KAVEEFYGELAKLDNVK-ER 320 Pyrococcus hori...
WP_003414285 254 VDTSPTARGGWr--------eGERFLETLA-----------ETAASVNQa-----------rYAEYRAMYPGVNAIVg-- 301 Mycobacterium t...
WP_004082354 228 FVKEEYDYFLThvrkrygvelPGSIEEIFSIVNefysevfkFERERFKKakenfekldtsKIEERFQKIEKVLQSKK--Y 305 Thermotoga
WP_010871191 264 IEDEFFKNINKrlktnynpkdDEKKFDILKNLCnn----fsKTVVEFELkkn-----npvYVEKSYEKLLADINKD--DA 332 Methanocaldococ...
WP_010916364 251 IGRSFDNIYKSdknqfyaiskVFNKLIDIKINDasd--htkNEIINKMLci-------sgKYYRDILKKEKEHYNDNpDK 321 Thermoplasma vo...
WP_011019687 235 TDHGELKRVLD----------TWDRVELPRLPKp------vFRFLRDVRs-----------GLRDFWEET--LENPEtVL 285 Methanopyrus ka...

WP_011021931 305 AILHIGWGGGWYSTTIGLIIETLPGF-STclvgnpknwklenttI---RNSFGLGKKPGTNKFSIN-----FPKTKRVTL 375 Methanosarcina ...
WP_010884276 321 DVIRLGWGSGWISMTVGILLMRKRGW-ER---------------V---RRKLGLGKNPHTNKIVER-----FPKTKRLAN 376 Pyrococcus hori...
WP_003414285 302 PIVYLGGGAGYRSKTFVTDQDDMAKVlDAqf-----------gkV---VKHVDKTRELRVSPLVLK-----RTKIDNICY 362 Mycobacterium t...
WP_004082354 306 VLIHIGYGGGLMANSLFILLDEETRK-QVr-------------nI---IKYHKDDEAPLTRRYLVQs----ENNSYRVIS 364 Thermotoga
WP_010871191 333 IYLNLGFGGGFLNKTVYPLLWKNDEN-HLyf-----------rkIkslFIALSGGNKNLKNAWLKAnsyldFPTTKTVYV 400 Methanocaldococ...
WP_010916364 322 EVLLIGFGGGIEEKTIINSLDDEQFK-KA---------------------EHIIKISNKKIKFSGR-----MPSTAWTIN 374 Thermoplasma vo...
WP_011019687 286 ERAREGWREGLRALSERFRVDVPDDA-DVqlgwg------ggrlV---KTALPLAGRVLRGPLDQF-----APQTVKLVD 350 Methanopyrus ka...

WP_011021931 376 eGK-----PLGWVKL 385 Methanosarcina acetivorans
WP_010884276 377 -GQ-----PMGWIKI 385 Pyrococcus horikoshii
WP_003414285 363 --------EMGQCEL 369 Mycobacterium tuberculosis complex
WP_004082354 365 --------PIGWCAL 371 Thermotoga
WP_010871191 401 -KNnsaiaPLGWIKM 414 Methanocaldococcus jannaschii
WP_010916364 375 -NK-----KFGVLEV 383 Thermoplasma volcanium
WP_011019687 351 -GE-----VPGLVRV 359 Methanopyrus kandleri
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