Conserved Protein Domain Family
cas_TM1791_cmr6

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TIGR01898: cas_TM1791_cmr6 
CRISPR type III-B/RAMP module RAMP protein Cmr6
CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.
Statistics
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PSSM-Id: 213662
Aligned: 10 rows
Threshold Bit Score: 186.839
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAM02509     488 VELRFpHSRLVVGMGGPH-----------------------PAENDLTLDPVTGLPVIPGTTLKGVARAAGELI--LERg 542 Methanopyrus ka...
WP_010879354 101 FSMRT-KSRLVVGLGDES-----------------------VYETSIRLHRNYGVPYIPGSALKGVAKHYAFSI--LAR- 153 Archaeoglobus f...
WP_010896513  73 FFLKS-SFPLIIGQGNPS-----------------------ILETHLTLHPIYGIPYLPGSLIKGVTAHYCHQV--LGK- 125 Bacillus halodu...
WP_010880199 145 LKLKT-AERLIVGLGTTH-----------------------VFETGLALHHLFGIPYIPSSSLKGIVRMAHFWE--IVE- 197 Aquifex aeolicus
WP_011012264 111 gKFKT-QSRLVVGLGDES-----------------------VYETSIRLLRNYGVPYIPGSAIKGVTRHLTYYV--LAEf 164 Pyrococcus furi...
WP_011026626  91 YKITT-ASRLVIGLGAEH-----------------------PLETSLTIHHIFGIPYIPGTALKGVCRMVSFWD--IAI- 143 Caldanaerobacte...
WP_010865404  74 LKMRV-KGKLLLGAGNPS-----------------------SIEVGITLSRNYGLPIIPGTAVKGAFASFLFEF--ERD- 126 Thermotoga mari...
WP_009990111  67 ITFIT-LSKLLTGWSPIYf----------------------ITEVPLAWDMILDTPYIAGSEIKGIVKNYFKEV--TSN- 120 Sulfolobus solf...
WP_005874906  58 FELKTcYPGLLCGVGYHHeinkpadekgkkvegdkeddapeVYNLGMYFDYTSGLPVIPGSSIKGMLRSAIEEWdfLAD- 136 Porphyromonas g...
BAK54699     120 VRIKT-SSKTLVGVSTNFgy--------------------tIFENGISFDPYLNVPYIPASEIKGLLRSMTDD------- 171 Sulfolobus toko...
AAM02509     543 -----------------------Dp-----------------------------DELRKYFGAddtrqarkrfrevfgsk 570 Methanopyrus ka...
WP_010879354 154 -----------------------Engdeilriyesv-------kedlkariakrDKIKKNDVP----------------- 186 Archaeoglobus f...
WP_010896513 126 -----------------------E------------------------------D--SKFKQG----------------- 133 Bacillus halodu...
WP_010880199 198 -----------------------Eniknikedk------------kddvikrlqEKLQKGDIR----------------- 225 Aquifex aeolicus
WP_011012264 165 inegndfykraktvqdafmkgdpK------------------------------EILSNAKVP----------------- 197 Pyrococcus furi...
WP_011026626 144 -----------------------EeargeeieegeienlqkelyeglifdrsssDKGKEDSPK----------------- 183 Caldanaerobacte...
WP_010865404 127 -----------------------K------------------------------Y------------------------- 128 Thermotoga mari...
WP_009990111 121 -----------------------D-------------------------------------------------------- 121 Sulfolobus solf...
WP_005874906 137 ------------------------------------------------------YELNNGVTR----------------- 145 Porphyromonas g...
BAK54699         --------------------------------------------------------------------------------     Sulfolobus toko...
AAM02509     571 presepK----------------------E------S-------------------------------------DDGNAS 585 Methanopyrus ka...
WP_010879354 187 ------E----------------------D------YyltaaviqelfekkfdelgairntrveigdtvisvgdIVKIFG 232 Archaeoglobus f...
WP_010896513 134 ------E----------------------E------Y-------------------------------------ALVLFG 142 Bacillus halodu...
WP_010880199 226 ------K----------------------EqnkeflI-------------------------------------HMLLFG 240 Aquifex aeolicus
WP_011012264 198 ------ErcsrlckeflrifgekkvpeiiD------E-------------------------------------LIRIFG 228 Pyrococcus furi...
WP_011026626 184 ------R----------------------V------L-------------------------------------HKLLFG 192 Caldanaerobacte...
WP_010865404 129 -----------------------------E------S-------------------------------------LAHIFG 136 Thermotoga mari...
WP_009990111 122 -----------------------------K------V-------------------------------------ESCLYG 129 Sulfolobus solf...
WP_005874906 146 ------E----------------------E------I-------------------------------------IEKVFV 154 Porphyromonas g...
BAK54699     172 ------E----------------------K------L-------------------------------------ADKLFG 180 Sulfolobus toko...
AAM02509     586 ESKR--AGEVTFHDALPDPD--WlrDv-DSPLEVDVLNPHYGEYYEGE---G----PPHESMRPKPVEFLTVRRGSRWRT 653 Methanopyrus ka...
WP_010879354 233 TQKE--EGSVIFFDAFPTPEqlK--D--KPNLELDIMNPHYQPYYQHG---E----PPGDWHSPNPIFFLTVPAGVEFTF 299 Archaeoglobus f...
WP_010896513 143 SQEQ--AGAIHYHDALPTPK--S--I--KNCLSLDVITPHHQSYNQGL---Nq---APRDDDSPVPVPFLTVKADFRVIL 208 Bacillus halodu...
WP_010880199 241 TQKF--KGLLTFLDAYPMID--E--SnkNKIFDLDLINVHYKSYYTQN---K----PPGDWENPNPVYFLTVSKGIEFHF 307 Aquifex aeolicus
WP_011012264 229 TQKK--EGEVVFFDAIPIAE--EiaD--KPILELDIMNPHYGPYYQSG---EknvpPPGDWYDPIPIFFLTVPKDVPFLV 299 Pyrococcus furi...
WP_011026626 193 TQDF--KGLLLFLDAFPVIN--N--N--VSLFDVDIINVHYKSYYGDDtgkT----APGDWENPIPIPFLTVKENTSFQF 260 Caldanaerobacte...
WP_010865404 137 DTER--EGDLIFLDAIPVSD--L-------KFSLDIVNPHFQPYYMKE---Kl---PPNDWYDPVPIKYLVVSSGVFWFT 199 Thermotoga mari...
WP_009990111 130 DEGK--MGKVIFFNAYPIDG--K--N----VLTYDIITPHYNGAK------------DEYNVKPIPIKFLAINKGITFKT 187 Sulfolobus solf...
WP_005874906 155 GKEYsiYDRDIFLDAIPIRV-----D--NTLFGEDYITHHPNPLQ-----------------NPNPVRFLRVEPGVTYQF 210 Porphyromonas g...
BAK54699     181 SEES--EGILMITDSYPIQA--E-----GSIFLPDIITPHYVNAE------------DESRVQPKPSIRFVIAPKVTFDF 239 Sulfolobus toko...
AAM02509     654 VLVSE-----------------------RR--------------------G---S---LDVALRL----LK----YGVER 676 Methanopyrus ka...
WP_010879354 300 AVASR-----------------------DL--------------------Dd--L---AEKAEKL----LK----EALKK 323 Archaeoglobus f...
WP_010896513 209 SCEDL-----------------------AY--------------------Ae--W---LNIAQKI----VS----HAVTE 232 Bacillus halodu...
WP_010880199 308 WVLFDsyraeklkkyndfenvinelldnNY--------------------En--L---RNKLKEL----LE----DTLTL 354 Aquifex aeolicus
WP_011012264 300 AVGGR-----------------------DRe-----------------------L---TEKAFSL----VK----LALRD 322 Pyrococcus furi...
WP_011026626 261 SVLFD-----------------------RVrfeelikekippevkgaidfLn--D---CTRLQKLvenwIK----KALTE 308 Caldanaerobacte...
WP_010865404 200 VLESR-----------------------S---------------------Gv--I---GNSEKEL----IKqrfvEMLKA 226 Thermotoga mari...
WP_009990111 188 YLAFD-----------------------NK--------------------El--NecgKDSLYLL----LKt--mIFSMR 216 Sulfolobus solf...
WP_005874906 211 RFILK-----------------------DH--------------------GeklT---VDFRTKL----FK----AIICT 236 Porphyromonas g...
BAK54699     240 FIYYK-----------------------NL--------------------Dt-yL---RKVLEQL----II----KMIKE 264 Sulfolobus toko...
AAM02509     677 LGIGARTCAGYGYGE 691 Methanopyrus kandleri AV19
WP_010879354 324 FGVGAKTSLGYGRFD 338 Archaeoglobus fulgidus
WP_010896513 233 MGIGGKTNAGYGKME 247 Bacillus halodurans
WP_010880199 355 YGVGAKTRLDYGIFD 369 Aquifex aeolicus
WP_011012264 323 LGVGAKTSLGYGRLV 337 Pyrococcus furiosus
WP_011026626 309 FGIGAKTRLGYGYFK 323 Caldanaerobacter subterraneus
WP_010865404 227 YGLGAKTSYGYGRFE 241 Thermotoga maritima
WP_009990111 217 IGWGRKVTRGYGSLD 231 Sulfolobus solfataricus
WP_005874906 237 FGLGAKTNVGYGQFV 251 Porphyromonas gingivalis
BAK54699     265 -GIGSKTSLGYSLFT 278 Sulfolobus tokodaii str. 7
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