Conserved Protein Domain Family
cas_AF1879

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TIGR01896: cas_AF1879 
CRISPR-associated protein Cas4/Csa1, subtype I-A/APERN
CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model describes a particularly strongly conserved family found so only in the APERN subtype of CRISPR/Cas loci and represented by AF1879 from Archaeoglobus fulgidus. This family has four perfectly preserved Cys residues. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa1, for CRISPR/Cas Subtype Protein 1.
Statistics
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PSSM-Id: 273861
Aligned: 6 rows
Threshold Bit Score: 334.446
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011007021   3 REFRMVRGLRVEVGEELRGWRWGEPPVQPPPLgV-RLSVSDIVGGGCESRRDLYLKRVLGVRAEPNGGMKFGAYIHEVFK 81  Pyrobaculum aer...
WP_010980726   7 LKRLHRIREMDPVPDELRGWHYYSPPVKPKAY-L-GLTMGEIAYDYCPTKRDVYVRRVLNQKGSERAQLVFGQAIHKVFS 84  Sulfolobus toko...
WP_010923413   9 LRRLHSYRASDPIEEELRGWNYYMPPIKPRRY-L-GLSISDVAYKYCETKRDVYLRKVLKIQGEQRTPLLLGQAIHEIVR 86  Sulfolobus solf...
WP_011007094  11 LRRAKITWGPVEISPEYRGWNYDKPPVKPPAY-L-GLALSDFAYGYCPTGRNIYLKYVLGERGAAVKALVEGQALHQALF 88  Pyrobaculum aer...
WP_010977960  10 LLSKRMKGFPRAISEELRGWHWNEPPLYPSSN-T-LLSVSDLTNGLCDSGRYVYLK-HKGIVPKVEAKI--GNTIHTTYA 84  Sulfolobus toko...
WP_010866254   6 LWDLVRSSAGDGVYAELRGWKWN---VVGPRY-AaRPTLSDVT-GVCPVGRDTYLRRVLNTRVN-GGLLRLGALVHEAFL 79  Aeropyrum pernix
WP_011007021  82 RSLAELRSLIEGGAVKGWELVQSFNAEA----I---------AREAAiaaeaeaDPRGVELARylaiQVAARVDEIASRS 148 Pyrobaculum aer...
WP_010980726  85 KALNDVRISYVLGKDPYQIVKESYLESE----F---------CPQEI-------SEYCRKVYGnlilFWSSWLAEAKAFY 144 Sulfolobus toko...
WP_010923413  87 NVSNEVVKLLSSGYKPWSVLETLFRNNKivrsL---------CPPQF-------IKYCEEVY-------KAYALDLLSDF 143 Sulfolobus solf...
WP_011007094  89 KALEDYKKYAYSGHPMSPSFEGVPEDVR----P---------KAEAL-------YKYVATRLL----GEHSYVSAARLAR 144 Pyrobaculum aer...
WP_010977960  85 TAIETIKRLIYEHEDLDSVKLRTLMTDE----FynlkvevieVAKIL-------WDHIVSIYS----AELEKARSK-PFL 148 Sulfolobus toko...
WP_010866254  80 LPFKAHR--VGDAYRMFNYLLRRVRAR------------------------------GNEIR------VMNAVFEKAVEF 121 Aeropyrum pernix
WP_011007021 149 SADSLSIAaravPVLAEYVIDGRPLGLT---LVRADaLYYNv--VVEIKVGSYSERHALALAGYALAIEADEEVPVDAGL 223 Pyrobaculum aer...
WP_010980726 145 GGDSVGFL----PWATEVRVDGSAIGLSdrlTVDAL-GEFT---VVEVKSGKREEFHKLALAGYALAIESVLELPVDYGL 216 Sulfolobus toko...
WP_010923413 144 S-DSTSFi----PVISEFKVDGSPLGLSsrlSVDAIm-QLSl--VVEMKVGSVQEFHRLALAGYGMALESALELPIDFGA 215 Sulfolobus solf...
WP_011007094 145 SRDSAVFYt--aPIATQVAVDGSPLGMSy---VVADgVALGa--VIEFKFGPAQNVDA-ALAGYAMAIEADWGVPIDYGI 216 Pyrobaculum aer...
WP_010977960 149 RKDSLASLv--iPFHVEYPVDGSLVGLQsalRVDAFiPILPl--IAEMKTGSYKRDHELALAGYALAFESQYEIPVDFGY 224 Sulfolobus toko...
WP_010866254 122 SAAARVDGi---PVAVEPNVPGGPVGLSdyvRPDLLvGIMPvdlVLAGHGDRWVARKELAIAGYALAVEAWTGNPVDYGV 198 Aeropyrum pernix
WP_011007021 224 LISVAFNGG--VKLRAYPVAIGEGLRREFLEERNRLMELVASGSDPGLSPKCDDKCPLWRHCH 284 Pyrobaculum aerophilum
WP_010980726 217 LVYINGFPNd-VEIKFESYYISPDMRREILDKRDEIIEMVLNGRDPGKPVKCPETCPFYEVCW 278 Sulfolobus tokodaii
WP_010923413 216 LIYVNGINTssPEFKVEVFYVSPDMRKEFLDARDEVIDMISQEKDPGMPVSCSPSCPFLNYCN 278 Sulfolobus solfataricus
WP_011007094 217 HVQITVNST--VEYKATAYPLGDSARTKFLELRDEAIDIVIAGRDPGVAPDCPKTCPFYHICH 277 Pyrobaculum aerophilum
WP_010977960 225 LCYVNVIEGk-IHNNCRLIVISDTLRQEFVEVRDRALRAIDDDVDPGLAKKCSADCPFLPHCK 286 Sulfolobus tokodaii
WP_010866254 199 VVGLRVNDG--LKIVWRLVRVDDHLRTRFLERRDAVARIIEYRSDPGLPEACPPGCVFREVCG 259 Aeropyrum pernix
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