Conserved Protein Domain Family
cas_Cas5t
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TIGR01895: cas_Cas5t 
CRISPR-associated protein Cas5, subtype I-B/TNEAP
CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).
Links
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Statistics
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PSSM-Id: 273860
Aligned: 5 rows
Threshold Bit Score: 226.976
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
AAM07021       3 VLRIKIEGWTASFRYPGFISGfQPTLPVPPVSTVYGLISAARGELTVPADVN-----IGYVFDFESKAVDLETIYELSPg 77  Methanosarcina ...
AAL81245       1 MIRVKLKSWTASFRYPTFQAGnQPTLPVPPPSTIQGILSAAKGEPVYLSELPy----VGYVFKSEGRGVDLERIYSLSK- 75  Pyrococcus furi...
WP_010880194   3 CLKAEFFSPIALFKTPFSIKG-IETYPLPPYSTVIGLLYTASGKKWKGERFN-----ISVQGDYEAIFRDYVRFRKYNKk 76  Aquifex aeolicus
WP_015919205   3 LLRIEIKASTGHFAIPFLIFE-RKTFPIPMYSTMIGFVCNILADEAKISRFLssnfsMAVVGDHDGVVEEYTWFRNLSKe 81  Thermotoga neap...
WP_012676124  16 ILRIKAYQLFANYRKP-MSYNyWDSYPLPPLSTIRGWFHYVVWNGNKDENRHyipisMSIQGKFSSVIQDLQTLIKFDRk 94  Persephonella m...

AAM07021      78 l-------------------sAKSNVIKREFLYNPTLYLYLDr-----PDFEKHFRKP--RYPLLFGRSGDLAKVSELKE 131 Methanosarcina ...
AAL81245      76 ---------------------EETDVIAREVLYNAELNLYLP------DEWERYFRKP--RYQLLLGRSSDLATVEEIKK 126 Pyrococcus furi...
WP_010880194  77 d------------------kkLETLPLEVPLFYNFRLTVHILgdenllKEFEKALKFP--YVFPYLSGGEYPVKITKVKM 136 Aquifex aeolicus
WP_015919205  82 shtkkficsfnreanneiehpGGQSPVKIQTLINPKINLFLKaeewilEMVKESFENPqcISRPHLGRSEDVVDDIKVEL 161 Thermotoga neap...
WP_012676124  95 rntkgei------viegfnkaFSKSPTYVTNIFDINLHIYIKaeehflHRFIENVFKL---EYPSIGRYEDLVRIDELKI 165 Persephonella m...

AAM07021     132 LELEEE--------AGKrLGKTILPFGIkGAYG--------LVQALPSHFT-DTIPRKAVGVKPYLL------MDEFFVY 188 Methanosarcina ...
AAL81245     127 VELGEK--------KAP-IGGTVVPIDL-GIPG--------IVHALVVEYDySTIPRKPRLIKPFVIlpfprnMGERKRQ 188 Pyrococcus furi...
WP_010880194 137 VACRKEyfdtfnipKNAyIPENIFTEEFrVSLEg------hGVYYRVPSFLiSQKPRQHEWVGVYYV------QKGTKVS 204 Aquifex aeolicus
WP_015919205 162 IDCEKKqvf--dtnGYTwMPSPEFVDDVsDSYEelykrisgSVYRVSSVYIiQNNRRIFEFVHAKLHr----gAIPMVGF 235 Thermotoga neap...
WP_012676124 166 IEPEPIdlyeephdIYYgIYINKKTADYfGLRGin----yrMNFKYDGDLLnKTGLRYFERKDIVYV------D-NAVLG 234 Persephonella m...

AAM07021     189 PEKCLFDPEMD 199 Methanosarcina acetivorans C2A
AAL81245     189 TAKALYDPDLD 199 Pyrococcus furiosus DSM 3638
WP_010880194 205 EMELLVDEEGE 215 Aquifex aeolicus
WP_015919205 236 KVPEVLSWNGT 246 Thermotoga neapolitana
WP_012676124 235 EGEILFDKEEN 245 Persephonella marina
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