3VZH,4F3M


Conserved Protein Domain Family
cas_Cas5d

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TIGR01876: cas_Cas5d 
Click on image for an interactive view with Cn3D
CRISPR-associated protein Cas5, subtype I-C/DVULG
CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.
Statistics
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PSSM-Id: 273847
Aligned: 3 rows
Threshold Bit Score: 308.74
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3VZH_A        11 VRVSGQRALFTNPATKGGSERSSYSVPTRQALNGIVDAIYYKPTFTNIVTEVKVINQIQTELQGVRALL----------- 79  Streptococcus p...
4F3M_A         9 FELFGDYALFTDPLTKIGGEKLSYSVPTYQALKGIAESIYWKPTIVFVIDELRVMKPIQMESKGVRPIE----------- 77  Bacillus halodu...
WP_010932806  10 LEVKGDYACFTRPEMK--VERVSYDVITPSAARGIFEAIFWKPAIRWRIRKIEVLNPIKWISVRRNEVGqtasersdgif 87  Chlorobaculum t...
3VZH_A        80 HDYSADLSYVSYLSDVVYLIKFHFVWNEDRK-------------------DLNSDRLPAKHEAIMERSIRKG-GRRDVFL 139 Streptococcus p...
4F3M_A        78 YGGGNTLAHYTYLKDVHYQVKAHFEFNLHRP-------------------DLAFDRNEGKHYSILQRSLKAG-GRRDIFL 137 Bacillus halodu...
WP_010932806  88 IETARQQRAGLFLRDVAYRLHAELEFVPPSErpdakrpvpeslqdgretsELRKDENPGKYYAIFERRARKGqCFNQPYL 167 Chlorobaculum t...
3VZH_A       140 GTRECLGLVDDIsqeEYETTVSYYNGVN-IDLGIMFHSFAYPKDk-KTPLKSYFTKTVMKNGVITFKAQSECDIV 212 Streptococcus pyogen...
4F3M_A       138 GARECQGYVAPC---EFGSGDGFYDGQGkYHLGTMVHGFNYPDEtgQHQLDVRLWSAVMENGYIQFPRPEDCPIV 209 Bacillus halodurans ...
WP_010932806 168 GCREFSCEFRLVd-dLANEPPP---ISEtRNLGFMLYDLDFQKNlkEP--PPAFFPACLEKGVIKVPDWESEEVR 236 Chlorobaculum tepidum
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