Conserved Protein Domain Family
cas_cas5a

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TIGR01874: cas_cas5a 
CRISPR-associated protein Cas5, subtype I-A/APERN
This model represents a minor family of CRISPR-associated (Cas) protein. These proteins are found adjacent to a characteristic short, palidromic repeat cluster termed CRISPR, a probable mobile DNA element. This family belongs to a set of several Cas proteins, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. The family is designated Cas5a, for CRISPR-associated protein Cas5, Apern subtype.
Statistics
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PSSM-Id: 273845
Aligned: 4 rows
Threshold Bit Score: 200.089
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q57827         6 LVALLRFPFYSFG-K-QSYQVRQSLLLPSPSALKGALAKGIILLGGKK--GKSLDEIAKKTVEELENKLIYVGAK----P 77  Methanocaldococ...
WP_010980734   6 VFLKLHWGFYVSY-P-EASKAKPSFYLPPPTTLIGALSYGKYRGVDTKafKGKAGSPALEIKVKAAASFSNEFVG----G 79  Sulfolobus toko...
WP_011007100   4 LLVKLRLPLFSIK-HyETYQVAATLPFIPPSTVVGALVQ-----AAAR--GGLCEGDCLAEVRGWIYKARDVAAP----T 71  Pyrobaculum aer...
WP_010866247   8 VVAELATPAFSVKnP-ESYQVASPLPLPLPSTLLGGLMRGASLLGSCT--GGIASQSCIKKTGRIVKAAAPLSKPgqilG 84  Aeropyrum pernix
Q57827        78 yK--SSIIKTPILLKr---------lR-N-LEDQKNPEKSDAMRREYVFAREILAIYVF-RrklSEEEKDLMLKAVYLID 143 Methanocaldococ...
WP_010980734  80 -YteDIIRSVIMYFQ-----------R-K-ERRGDPKFRYGVVPTGKIYAPNQVVKVVY-V---AEMDKEELERLSWSIT 141 Sulfolobus toko...
WP_011007100  72 vKfpVVLKRARGVLEe---------gK-LpLSGEELGGYFDAMVREYAYVAEKAVLVVP-S---AEAHIGRLEKALWLLE 137 Pyrobaculum aer...
WP_010866247  85 vEweVVLRRLRKVLEpdseegstrenRgN-RVLDELSRISDALLRGYITPYNPVYAVFVaR---GRDNANRIEKALWYID 160 Aeropyrum pernix
Q57827       144 QLGDTECVGNVIKTEWVEVKEE-KAPLKTYVKFKKV 178 Methanocaldococcus jannaschii DSM 2661
WP_010980734 142 RLGCKECLVSVEDVEIGEAKRV-KGKVKTSYYFPAS 176 Sulfolobus tokodaii
WP_011007100 138 RVGDTESYVSVRGVEVLNARPCgAGEVDVAVKLAKV 173 Pyrobaculum aerophilum
WP_010866247 161 RLGDSESLVSARPVGRCQLAEFrSKSVNTPVALDSA 196 Aeropyrum pernix
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