Conserved Protein Domain Family
cas_TM1810_Csm2

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TIGR01870: cas_TM1810_Csm2 
CRISPR type III-A/MTUBE-associated protein Csm2
These proteins are found adjacent to a characteristic short, palidromic repeat cluster termed CRISPR, a probable mobile DNA element. This model represents the C-terminal domain of a minor family of CRISPR-associated protein from the Mtube subtype of CRISPR/Cas locus. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2.
Statistics
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PSSM-Id: 273844
Aligned: 12 rows
Threshold Bit Score: 68.9488
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAM02528      68 VSNSQLRRLYAEITNVRnetrr-----aregkGSWEDVVAALGKARVVLAYTKGRQG--KEFEGLYEVLDEALRKATKIv 140 Methanopyrus ka...
Q59064        42 IPATKMRDFYDYVLRID---------------EKNENWYKELVLLKPKLAYNYGKETnrRKKEALEKLAGTFSEIIDKI- 105 Methanocaldococ...
AAB85570      47 LKTTQLRKFFSAIRSMEkk------------aDSWKSIEADFYLLKPQLANARGRD---LIPEGFYEVMKKMMDKVDRG- 110 Methanothermoba...
AAM05336      73 VTSTQLRRLLNGFQIVKek------------tKKSGLKTTHISKLKLNLAYVTARN---YNIKRLTDLLDSLLDRERFP- 136 Methanosarcina ...
AAS82433      35 LKSSQFRNYFAELRALEnrferer--rkegeeLAFARLVPQLELLRAKLFYNTRSQGplRDAKEFVEFMEEALEAGKRSp 112 Thermus thermop...
CAD84033      39 NKSTQIRRFYDELVGWQerig--------tdeQKFRDYAAFIHMLNAKAAYAQGRN---LVTREFVQWLRDCIKQIDGP- 106 Nitrosomonas eu...
WP_012256464  53 LTTSQIRNIFGEVRSIEqevl-------ptdqQLSLDVQRRLLMLKPKMAYQVGRF---SNNQALQELVETLSDAIGLI- 121 Chloroflexus
WP_010884273  60 LKTNQVRRVLEMARDIElki----------rvGRAENITLDVTRMRFLLAYTVGRAGr-RERSSIEAFYRVLDPMLKQM- 127 Pyrococcus hori...
WP_004082357  31 LKTNQLRKFHGHLTKIWsnyiykkkdyrdnpeKFNEEILNELHFMKIFLAYQVGR-----DIEGISELKEILEPLIDEI- 104 Thermotoga
WP_010916367  53 TTQNQIRKFYDYTIKINs--------------kDEKKAKIKLAMMMPQIYYAIQRKVi-SSDSPFVKFLEDSIDKLNKT- 116 Thermoplasma vo...
WP_003414296  27 LTTTQLRVLLSLTAQLFdeaqq------sanpTLPRQLKEKVQYLRVRFVYQSGREDavKTFVRNAKLLEALEGIGDSr- 99  Mycobacterium t...
WP_002486044  43 LTTSKLRNLMEQVNRLYtiafn------snedQLNEEFIDELEYLKIKFYYEAGREKsvDEFLKKTLMFPIIDRVIKK-- 114 Staphylococcus ...
AAM02528     141 edseDDDVr--rRAIEALHFLAEGIVAFHRFLGG 172 Methanopyrus kandleri AV19
Q59064       106 ----DNDL----NKFKNFKTFFEALVAYHKIYAK 131 Methanocaldococcus jannaschii DSM 2661
AAB85570     111 ----DDDEk--iENFRVFVRFLESIVAYHKFYNP 138 Methanothermobacter thermautotrophicus str. Delta H
AAM05336     137 ----ENTDl--tEHFDSVVTLLEGVIVYHKLAGG 164 Methanosarcina acetivorans C2A
AAS82433     113 ------------KDFEAMMKYVEAVLAYFYALAK 134 Thermus thermophilus HB27
CAD84033     107 ------------RTLNHFRLHFEAMIGFLKAIRg 128 Nitrosomonas europaea ATCC 19718
WP_012256464 122 ----GNDK----NRFQTFVNLFEAILAYHRRYGG 147 Chloroflexus
WP_010884273 128 ----SEDEdfarRYFGKFFDFLQAVVAYHRFFGG 157 Pyrococcus horikoshii
WP_004082357 105 ----KTPDe-----FEKFKKFYDAILAYHKFHSE 129 Thermotoga
WP_010916367 117 ----E-DFe---NAFNRFLNVFQAIVAYSKKSRS 142 Thermoplasma volcanium
WP_003414296 100 ------------DGLLRFCRYMEALAAYKKYLDP 121 Mycobacterium tuberculosis complex
WP_002486044 115 ------ESk---KFFLDYCKYFEALVAYAKYYQK 139 Staphylococcus epidermidis
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