Conserved Protein Domain Family
excise

?
TIGR01764: excise 
DNA binding domain, excisionase family
An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376). [Unknown function, General]
Statistics
?
PSSM-Id: 200128
Aligned: 17 rows
Threshold Bit Score: 52.9886
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
ZP_00129284    5 TFTVGEAAELLSCHKETIRRAIKDGSLRAAQL-G-RGYRISRADLEAFWTA 53  Desulfovibrio desulfuricans G20
P22876        42 LLTVEEAAKQLGLGRTKTYALVASGEIESVRI-G-RLRRIPRTAIDDYAAR 90  Saccharopolyspora erythraea
CAC44720       4 LLTVDQVAERLGTGVRFPRRLIEERRITFVKV-G-RHVRIPETAVEAYVSA 52  Streptomyces coelicolor A3(2)
ZP_00025252   84 ELTTQEAADLLNVSRPHFVKLLEDGVLAFHRT-G-KHRRVRFADLMQYKEA 132 Ralstonia metallidurans
AAF76245      83 TLTTQQAAELLGVTRPTLVRLLDAGKIPFEKP-G-THRRIKLEDVLAFKEV 131 Arthrobacter sp. TM1
BAB67578       4 LLRPKEACQLLGISYSTLLRWIREGKIRAVMTeG-GKYRIPYSEVKKYLER 53  Sulfolobus tokodaii str. 7
WP_010932357   8 WLSITEICKYLGVSNDTVYKWIDKHGMPAHRM-G-RLWKFKKDEVDEWVKA 56  Chlorobaculum tepidum
WP_011067721   5 aMSVKEMAVYLGVHLDTVYKMVRAGEIPHYRL-R-SKILFSKEAVDEWIEQ 53  Oceanobacillus iheyensis
WP_002006755   5 YITVEEAAEYLNLPKSYIEELIQQKKIRALFD-G-EQYLLNKEQFNTHLEQ 53  Bacillus cereus
WP_003899418  32 YITISEAAEYLAVTDRTVRQMIADGRLRGYRS-GtRLVRLRRDEVDGAMHP 81  Mycobacterium tuberculosis
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap