Conserved Protein Domain Family
holin_LLH

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TIGR01673: holin_LLH 
phage holin, LL-H family
This model represents a putative phage holin from a number of phage and prophage regions of Gram-positive bacteria. Like other holins, it is small (about 100 amino acids) with stretches of hydrophobic sequence and is encoded adjacent to lytic enzymes. [Mobile and extrachromosomal element functions, Prophage functions]
Statistics
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PSSM-Id: 130734
View PSSM: TIGR01673
Aligned: 5 rows
Threshold Bit Score: 85.2829
Threshold Setting Gi: 499336494
Created: 8-Oct-2014
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAK27916       1 MNNIlVNVSAVIVALVLSYFVFWYRNHKIEIDKKRA-KGDALAFVVDTLGQVATNVVYDLKDNSEKGTEKKEQAKVKIKN 79  Lactobacillus j...
AAK27939       3 LGQI-TDLVIVALSVVVTIIFYFYSKHKIEIDKKAL-QGDALAKAEQMIARSAGAIVFQTDKEGGSGQEKLVSAFNYLTA 80  Lactobacillus p...
AAC00556       3 LIDW-FNLIVAIGTIALAVVASVYV-H-LKAKIDTK-TA--AGKAFDLVGKLAVWAVNEAEHSQDGGAAKREFAAKLISD 76  Lactobacillus p...
AAM83087       1 MDQN-LMTIFSGILTVVGSVVSYFISQAAK----KH-SNVKNIDALAKLANQAVSWAQKNFNENP---EKLSEAINYVTE 71  Lactococcus pha...
WP_011026451   1 MKEL-IMTILTAGIQLLVMVVLGY----LIDYLSTKiGMEKL-KRYYEIAKAFVQAVEQQVG-SGNGPIKKEQVFKLLKK 73  Caldanaerobacte...
AAK27916      80 FYADAHLPAPSDAQVSGAIEKAVAIMKMSS 109 Lactobacillus johnsonii prophage Lj965
AAK27939      81 ILDMAHLPHPSTAYIKGEIEKLITTMKQAK 110 Lactobacillus prophage Lj928
AAC00556      77 QLKAKGITGIDEKMVYGAVETAWKEAIENV 106 Lactobacillus phage LL-H
AAM83087      72 EAKKLKI-KTNPAQIEAQIEASLAQLKKNF 100 Lactococcus phage 4268
WP_011026451  74 VIGN----KLTDEEIDKLIEAAVFEMNYVL 99  Caldanaerobacter subterraneus
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