Conserved Protein Domain Family
YD_repeat_2x
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TIGR01643: YD_repeat_2x 
YD repeat (two copies)
This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Links
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Statistics
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PSSM-Id: 273728
Aligned: 25 rows
Threshold Bit Score: 32.5621
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
CAA51678     2013 YNNRGQLIHSFERERfQSWYYYDDRSRLVAWHDNKGNTTQYY 2054 fruit fly
CAC89612      773 YDREDNLLLYNENGSrITRFGYFGQGRLQSRTDPDGSLTEYL 814  Yersinia pestis CO92
CAD17302     1288 YDAADRLLADDNRGWnDRRYSYDAADNRTSATSRQAKQTIVA 1329 Ralstonia solanacearum GMI1000
CAD18288      638 HDAQGKLTGVREPSGaVTQFQYDSQRRLAAMALPTGDRVALE 679  Ralstonia solanacearum GMI1000
CAD17302      811 YNDQHEPLTYRDAAGqLTTYTYNTAGQKTSEINALGQTVRWE 852  Ralstonia solanacearum GMI1000
CAB82067      463 YDAAGRETERRTGPM-AMAQRWDGYDRLVEQRLLDVHKEQFA 503  Streptomyces coelicolor A3(2)
WP_021554270   17 RDSQYRITGVSHTDGiRLKLTYHASGYLKAIHRTDNGIQTLA 58   Escherichia coli
KDZ00444       49 CDERGLPVSLVSPQGeETRLAYTPQGLLSGIFRQDERRLGIE 90   Escherichia coli 2-474-04_S1_C2
EFR91885       76 YNDNNDVTSSTDTEGrKTTVTYDGADAVSETLATESQVSSVT 117  Listeria innocua FSL S4-378
EKJ61793       34 YDPDGNILREEAPDGsTTTYEWDEFHHLLARHSPAGRVEKFE 75   Escherichia coli 0.1288
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