Conserved Protein Domain Family
primase_Cterm

?
TIGR01613: primase_Cterm 
phage/plasmid primase, P4 family, C-terminal domain
This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus. [DNA metabolism, DNA replication, recombination, and repair, Mobile and extrachromosomal element functions, Prophage functions]
Statistics
?
PSSM-Id: 273716
Aligned: 9 rows
Threshold Bit Score: 367.049
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
CAD14541     423 WALNTPGGVVDLRTGQLRAHRR-EDRMTK-VTTATPK-GDCPTWRQ-----F-----LSEVTGGDVELQAYLQRMAGYAL 489 Ralstonia solan...
AAD17635     510 YALNTPSGVVNLKTGELTPHRPeGWHTRV-TGAGYERdGAAPRWWA-----F-----LHRTFGGDKSMVEYVQRLAGYAA 578 Mycobacterium p...
CAA19404     413 HKLLVGNGVVDLRTGELLPVDRkYLLTRG-TTVEYDPnADCPMWMD-----F-----LGWAFQGDIEMIEYIQRMFGMCL 481 Streptomyces co...
AAD21912     145 RFILVKNGIYDKRKKKLLSFDHkFINFST-IETELVEnAPKPIINGwdvdsW-----LLDLMSGDSELVELLWQVIAASL 218 Streptococcus p...
YP_008126756 418 YFLNTQNGYINLQNGELINHDRqKMFTKI-SNIEYTDkIDAPLWQA-----F-----LNDIFAGDKELINYMQKAVGYSL 486 Listeria phage ...
KCO73249      61 HLLNVANGTLDLHTLKLRPHAPaDRITKI-CRGAYQSdTESPLWQA-----F-----LTRVLPDEG-VRGFVQRLAGVGL 128 Mycobacterium t...
WP_000985236 428 YLIPVKNGVFNRKTKQLESFTPdCIFTTK-IDTSYVRqDIVPEING-----WnidrwIEEIACNDNQVVKLLWQVINDSM 501 Staphylococcus ...
EZN37723      42 NKIVLANGVYDLRDNSFKTKFDpEVHARSsHPVVYDPeATCETFEG-----F-----LRETVGAEN--IDFIFEWFGYNF 109 Streptococcus p...
WP_003058783 184 EYTVIGNQLYNYKTGQFEELTPdITVTRK-IKTGYNKkAKEPTIKG-----WkptawLLELFDGDAELYNLAIQIIKASI 257 Streptococcus d...
CAD14541     490 TGSTQEHALFFLYGTGANGKSVFVNTLATILGDYAVNAAMDTFMETrADRHP--TDMAGLRGARFVAAIETEQG-RRWAE 566 Ralstonia solan...
AAD17635     579 IGEVTHHVLPFLFGAGSNGKSVLMDVLSAVLGDYAITAPGNFLLAG-RERHE--TEIARLHGARLVVCSEVNAD-SKFDE 654 Mycobacterium p...
CAA19404     482 IGNNAHQVAFFLYGPGRSGKTTLTRVLSRLLGDYATSADLSVFNES-SSGHN--EPLARLAGARLVVFSETRQG-QRINE 557 Streptomyces co...
AAD21912     219 NGNHSYRKSIWLVGNGNDGKGTFQQLISNLVGLKN---VAPLKINQ-FSE-R--FGLAIIEGKTVIIGDDVQAGiYVDES 291 Streptococcus p...
YP_008126756 487 SGSTSEQVMFILFGNGRNGKSVFLDIINDIFGSYATNIQPQTIMVK-QQSSNanSDIARLHGARFVTTTEPNEG-VRLDE 564 Listeria phage ...
KCO73249     129 LGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTAEPDLFMHR-ENAHP--TGEMDLRGVRWVAVSESEKD-RRLAE 204 Mycobacterium t...
WP_000985236 502 NGNYTRKKAIFLVGNGNNGKGTFQELLSNVIGYSNI---ASLKVNE-FDE-R--FKLSVLEGKTAVIGDDVPVGvYVDDS 574 Staphylococcus ...
EZN37723     110 YREYTIQKMLFIYGSGGTGKSTLINILREMIGADN---YSAVTLQY-LMQER--FAKIGLYRKTANFDTDAKPQ-YLADG 182 Streptococcus p...
WP_003058783 258 TG-QSLQKIFWLFGEGGTGKGTFQQLLINLVGMDN---VASLKITE-LAKSR--FTTSILLGKSIVIGDDIQKDaVIKDT 330 Streptococcus d...
CAD14541     567 SKVKNLTGGDKISARFMRQDFFEFFPQFKLFVAGNHKPAIRNIDEAMKRRLHLIPFTVTVPPARR-DKTLQQKLL-AERD 644 Ralstonia solan...
AAD17635     655 AKVKLLTGGDVLSGRFMRQDFFDFVPSHTLFLMGNHQPDVKAGGTSFFRRFRLIPFEHIVPERERvEGLAHQLVA-EEGD 733 Mycobacterium p...
CAA19404     558 AQFKKFTGEDTLTASYKNKSWFEFLPAFTPVMFGNAQPSI-AFDSGVERRMKVIPMRAQISDGQK-NPKLVEQMMlNEGP 635 Streptomyces co...
AAD21912     292 SNFNSVVTGEPVSIEKKGENPYLAQFKKTVIQSTNAMPVFKNKSNGTYRRIVIIPFKKTFGINDD-NWAIKDDYI-NRKE 369 Streptococcus p...
YP_008126756 565 GLVKQLTGGDKVTARHLYKDEFEFTPEFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKV-DKQLKYKLR-SELT 642 Listeria phage ...
KCO73249     205 STIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQ-DRELDARLQ-LEAD 282 Mycobacterium t...
WP_000985236 575 SNFKSVVTGDPVLVEFKNKPLYRATFKCTVIQSTNGMPKFKDKTGGTLRRLLIVPFNANFNGIKE-NFKIKEDYI-KNPQ 652 Staphylococcus ...
EZN37723     183 ATLKMLTGEDTIHADRKNKEPINFYNYAKLSFAMNELPPMRDFSGGLKRRMMILEMDKVLTQEVKaKYPLDKIM--SEVP 260 Streptococcus p...
WP_003058783 331 SDIFSLATGDIMTIEDKGKRPYSIRLNMTVVQSSNGLPRMNGDKSAIDRRFRILPFTKVFKG-KP-NKAIRNDYI-NRKE 407 Streptococcus d...
CAD14541     645 GILAWAVQGCLDWQRLGrLD-PPQQVLDATEEYF-EAEDALGRWLDERCVRE-IN-AKTLTAeLFNDWKQWADSAGeF-V 719 Ralstonia solan...
AAD17635     734 AILAWIADGARQVLDGG-MR-EPASVLAATAQYQdDTRTGVARFLDECCTIG-EG-EAEVGA-VHQCYIAWAIAHG-EpL 807 Mycobacterium p...
CAA19404     636 AIMAWAVEGARLT-AAEsFVpDPPQVAQAVKEYK-RENDHIGDFIEECLVFD-EG-ATVASDvVWGRYSKWIEAGG-VdF 710 Streptomyces co...
AAD21912     370 VLEYVLWKAINLD--FDkFN-EPKATQERMQEFK-EENNTVYKFLNEYLSDV-VS-TRIPVRfLWDVYRSWCHEGN-HtI 442 Streptococcus p...
YP_008126756 643 GILNWAVEGFLKWQKEG-LG-MPKAVENASSEYK-SEMDVITAFIEDCCDVR-EG-EKVNAKkMYETYHEWAKENG-QyL 716 Listeria phage ...
KCO73249     283 SILSWAVAGWSDYQRIG-LS-QPDAVLAATSNYR-EDSDTIKRFIDDECVTS-SPvLKATTThLFEAWQRWRVQEG-VpE 357 Mycobacterium t...
WP_000985236 653 VLEYVLYKAINLD--FEtFD-IPDASEKMLEVFK-EDNDPVYGFKVNMFDQW-TI-RKVPKYiVYAFYKEYCDENG-YnA 725 Staphylococcus ...
EZN37723     261 GIFNRAMEGLRKALSKRdFS-ISASMRSSVEKWE-KGNDVVAMFLEDECDLS-ED-FKVPVRdVYPAYKFYCQDSG-YkP 335 Streptococcus p...
WP_003058783 408 VLEYLLKLAIETP--ITdIN--PKASIEILEEHH-KEMNPVIDFVSKFFTDElTS-EFIPNSfVYHVWKGFLEYYDiKqI 481 Streptococcus d...
CAD14541     720 GSQRRF 725 Ralstonia solanacearum GMI1000
AAD17635     808 VDTAKF 813 Mycobacterium phage TM4
CAA19404     711 VKKADD 716 Streptomyces coelicolor A3(2)
AAD21912     443 PKKSNF 448 Streptococcus phage DT1
YP_008126756 717 MSSTKF 722 Listeria phage LP-030-2
KCO73249     358 ISRKAF 363 Mycobacterium tuberculosis BTB08-221
WP_000985236 726 LSSNKF 731 Staphylococcus aureus
EZN37723     336 LARNSF 341 Streptococcus pyogenes ABC020060793
WP_003058783 482 KSERGL 487 Streptococcus dysgalactiae
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap