4QQX,3SK9,3S4L


Conserved Protein Domain Family
cas3_HD

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TIGR01596: cas3_HD 
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CRISPR-associated endonuclease Cas3-HD
CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Statistics
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PSSM-Id: 273711
Aligned: 146 rows
Threshold Bit Score: 56.4414
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4QQX_A        54 LVCHSLDAAAAA-------LvlwneylspglrDTIASSMEtd---------eeH---A--------GHC------IAFWA 100  Thermobifida f...
WP_012103095  36 LLEHVNLTYEYMnfi-caeKnln------nvfQNFQDKILiskns----dviiL---W--------KEM------MVNTI 87   Clostridium kl...
WP_010877585 552 dyklekeswvehaknslwvldcylipryyyviKNFADYFGy------------EyneF--------VNL------IKCIT 605  Archaeoglobus ...
WP_011722694  35 LKEHLERSIKYFykl-venKnld------nifLKFEAKLCk------------E---FsdkekslfREM------IVNTI 86   Clostridium novyi
WP_011499198  36 LEDHSQLCGNYFlyfienlElep------lidNLIIDLFGknn--------llS---I--------KQI------LLFAV 84   Methanococcoid...
WP_011641198  33 LLAHSQLTLYYF-------EkycsikdidkiiKKLIEACGf------------Q---G--------EEAdkvylaFVYAI 82   Syntrophomonas...
WP_011406530  36 LHEHSYKTWIIF-------Kelld----esvlTSFYSFFNkknyl---dmnkdE---F--------LDI------LKVFV 84   Methanosphaera...
WP_012108277  21 LNEHTNLTKIYL-------Ekikka---knldIVINDLIVkilkdknalkfkcL---M--------LEI------FDNLI 73   Campylobacter ...
WP_011099682  33 LKEHSDLALKYL-------YkiserksldnvfLKIENNFLekcsn----eekmV---Y--------RKM------LLNTI 84   Clostridium te...
WP_010879368  16 LEEHVATALKLL-------Dsaen-----sklVKYGKKLSp------------E---F--------ERA------VKLAI 54   Archaeoglobus ...
4QQX_A       101 GLHDIGKLTREFQ-----QQIaidlsaY--------PGEELS--------------------GEQRsHAAATGKWL---- 143  Thermobifida f...
WP_012103095  88 YMHDVGKINPSFQy---nKMLn----kL--------YEDNSD--------------------GGSE-HSLLSSYIYvsyf 131  Clostridium kl...
WP_010877585 606 ALHDLGKLNINWQ-----EKVg----wNgkiplahsDESDVR--------------------KLPP-HATVSAKAL---- 651  Archaeoglobus ...
WP_011722694  87 YMHDLGKININFQtikmkNKYf----kD--------KKDIEC--------------------SNSN-HSCLSSLIY---- 129  Clostridium novyi
WP_011499198  85 YYHDIGKINSNFQ-----Kv------kV--------NSKKSS--------------------SNSN-HSIFSEKVL---- 120  Methanococcoid...
WP_011641198  83 YLHDYGKINPRYQyd-vlENKv----fY--------AMREQA--------------------INSN-HALASAYLY---- 124  Syntrophomonas...
WP_011406530  85 YYHDIGKVSFSFQ-----IKKl----tK--------KDTEDRtrrysqlksiygdltnnllnMDSK-HSFYGYYLF---- 142  Methanosphaera...
WP_012108277  74 IWHDIGKINPTFQ-----AMKmk--nkA--------YKRDRR--------------------VAST-HSDKSFk------ 111  Campylobacter ...
WP_011099682  85 YMHDLGKINCNFQ-----RKKma--nkI--------FKEEKM--------------------SSTN-HSMLSSIIY---- 124  Clostridium te...
WP_010879368  55 IFHDTGKVFFQIK-----KGY-------------------GY--------------------MSFRgHEYFSTYIF---- 86   Archaeoglobus ...
4QQX_A       144 -------P-FAL-------------PSL------GYPngGLVTGLVAQMLGG-HHGtfh-------phPSFQSRNP---- 184  Thermobifida f...
WP_012103095 132 nnrikdmE-FEL-------------KDS------LYL--KYFMYLNGYIISK-HHGyldnmgnyklklEDFQEDCD---- 184  Clostridium kl...
WP_010877585 652 -------Q-PYL-------------ESL------FDD--AGVFKAFYLAIAH-HHGpwa-------reYKEYRLIP---- 690  Archaeoglobus ...
WP_011722694 130 -------M-DYYhkkiksdselinkENK------KKL--RLFMVLNAYVISK-HHTgld-------klDDFRAKLT---- 181  Clostridium novyi
WP_011499198 121 -------TsFLL-------------NEF------PNQ--KSIIYLIGTVVSL-HHTklrd-----fsiKDYDESQD---- 162  Methanococcoid...
WP_011641198 125 -------L-DHM-------------YRLwpgrptPAL--AKCLANFAYCISK-HHGnlg-------ngHDFSELEHv--- 170  Syntrophomonas...
WP_011406530 143 -------M-NYV-------------LHHy----nIEN--NPILLLLSYCILG-HHTkike-----inlENLEKKVPtmvc 189  Methanosphaera...
WP_012108277 112 ------------------------eIKK------SYE--EEVFKTHNDTVIFlFYHlls-------nvLNHHST------ 146  Campylobacter ...
WP_011099682 125 -------I-NHFlkeia---siengEHI------KLL--IAFLLLNSYVISK-HHGafn-------svNKFKEKLV---- 173  Clostridium te...
WP_010879368  87 -------D-VFArrli-----kseiENY------EAL--SELRKICNFSIFF-HHH---------------AMNIR---- 125  Archaeoglobus ...
4QQX_A       185 LAEF--GFSSPHWEKQRHAL-LHAv---------------------FDATGRPTPPDM--LDGPTASVVcGLVILADWLV 238  Thermobifida f...
WP_012103095 185 KDEYypDLTMTTLRESVIRNsFNNske-----------------ylDECIRHNNELEF--SIYIYSKFLfSLLTASDYYA 245  Clostridium kl...
WP_010877585 691 EFNKfiEEVWSVPKELIKVH-DSAn--------------------rLDFTYLNVADEN--EAYRLYGLLsKLIRISDRLA 747  Archaeoglobus ...
WP_011722694 182 QDDGegQRLCSSELCIFEDM-YNKviefttkdnilgklfklaektlKVYEEEEKNISV--LFYIYVRLMlSTLLMCDYYS 258  Clostridium novyi
WP_011499198 163 EIKIiqQIIQDTGLE------IKEisk-----------------deKFDFYSDNYSRD--KIFIFVKLFySLLVLSDSYS 217  Methanococcoid...
WP_011641198 171 AEKYciSDIDQSVFEHtq---------------------------fYMQQQKLIKQPI--AFYILCRLLyTLIVGCDYCA 221  Syntrophomonas...
WP_011406530 190 LNNFifNQEHYLKNNEIKEN-ISNidnh--------------inqlNKLLNENKTNNS--MFSCFYQYIySLLISADALA 252  Methanosphaera...
WP_012108277 147 ---LkdGLNYDILGESILDVs------------------------fRNIDREGSQQSK--EIYLLLKLHySLLIACDFYA 197  Campylobacter ...
WP_011099682 174 YDGEegKDLYTKYMYIFDKV-YKEeiiineslik---edlfdmyksTIQEKTEENKDFpvELYIYERFLaSLLLSCDYYS 249  Clostridium te...
WP_010879368 126 MREPeaGSNIKAGLKLLDVL-Ys----------------------eVKRFLEDKEKKA----------LkAALEEVKEKG 172  Archaeoglobus ...
4QQX_A       239 S 239  Thermobifida fusca YX
WP_012103095 246 T 246  Clostridium kluyveri
WP_010877585 748 T 748  Archaeoglobus fulgidus
WP_011722694 259 T 259  Clostridium novyi
WP_011499198 218 S 218  Methanococcoides burtonii
WP_011641198 222 T 222  Syntrophomonas wolfei
WP_011406530 253 T 253  Methanosphaera stadtmanae
WP_012108277 198 T 198  Campylobacter hominis
WP_011099682 250 T 250  Clostridium tetani
WP_010879368 173 T 173  Archaeoglobus fulgidus
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