4ES1


Conserved Protein Domain Family
cas2

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TIGR01573: cas2 
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CRISPR-associated endonuclease Cas2
This model describes most members of the family of Cas2, one of the first four protein families found to mark prokaryotic genomes that contain multiple CRISPR elements. CRISPR systems protect against invasive nucleic acid sequences, including phage. Cas2 proteins have been characterized as either endoribonuclease (for ssRNA) or endodeoxyribonuclease (for dsDNA), depending on the system to which the Cas2 belongs. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats. The cas genes usually are found near the repeats. A distinct branch of the Cas2 family shows a very low level of sequence identity and is modeled by TIGR01873 instead of by this model (TIGR01573).
Statistics
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PSSM-Id: 273699
Aligned: 11 rows
Threshold Bit Score: 85.1082
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4ES1_A         5 MLVLITYDVQ--TSsmGGTKRLRKVAKACQNYG-QRVQNSVFECIVDSTQLT-SLKLELTSLIDE-EkD-S-LRIYRLGN 77  Bacillus halodu...
WP_001242359   1 MRMILMFDMP--TEtaEERKAYRKFRKFLLSEGfIMHQFSVYSKLLLNNTANnAMIGRLKVNNPK-K-G-N-ITLLTVTE 74  Streptococcus a...
WP_002865397   7 MRVLLMFDVP--TKskKEQKLASKFRNNLIKLGyFMLQFSVYMRICKGLSSAkSSIENVKKILPP-Y-G-N-VRALIITE 80  Campylobacter j...
WP_010994558   3 KLYLVCYDIP--DD-----KRRTKLAKLIEQRC-QRVQYSVFECPLEESVLNyQLEKRWLPILKLsE-D-S-LRVYPLDA 71  Nostoc sp. PCC ...
WP_002214566   7 MRIIVFFDLPviTA--AKRKAANQFRQFLLKDGyQMLQLSVYSRIVKGRDSLqKHHNRLCANLPQ-E-G-S-IRCLEITE 80  Neisseria
WP_010879369   1 MLHLVVYDIS--DD--G---SRARLAKLLEKFGlQRVQYSAFRGELNPNDRE-VLARQVGKFVRD-D-R-DcIFIIPLCQ 69  Archaeoglobus f...
WP_002469399   1 MYLLVSFDLP--RDtkLERRIASKYRLRLIELGfSMKQFSLYERYVSNVQKKdKILEILKQEIPD-T-G-S-ITLYILPD 74  Staphylococcus ...
WP_011007092   1 MYVVVAYDIT--ED--E---VRNKVADALKAYGlERIQRSVFVGRINPALLKd-LVERLKRITKG-A-NaD-ITIFKVDR 69  Pyrobaculum aer...
WP_031680802  11 MFVLVIYDIS--DN-----RRRASLAKILAGFGy-RVQESAFEAMLTKGQLA-KLVARIDRFAID-C-D-N-IRIYKIRG 77  Mycobacterium t...
WP_011019678  10 RLRLYVYDFK--EP--GGEAERRKLRELLESHGaFRLQYSTYALLAEPEVHArVLRRVVARVDFE-E-G-DsLIVVPMCR 82  Methanopyrus ka...
WP_010916361   1 MYLIVVYDVD--ES-----RVN-KVNKYLKRYLlWR-QNSVFEGEISENLID-SMIKGITKIIKD-E-D-S-IIIYKFKV 66  Thermoplasma vo...
4ES1_A        78 NYKTKVEHIGAKPSIDL----EDPLIF 100 Bacillus halodurans C-125
WP_001242359  75 KQFARMVYLHGERNTSVa--nSDSRLV 99  Streptococcus agalactiae
WP_002865397  81 KQFDKMELLLGGIVFNEkvnnETNLTL 107 Campylobacter jejuni
WP_010994558  72 TAKQQTRVYGGEPPYEP----PDYLIL 94  Nostoc sp. PCC 7120
WP_002214566  81 KQYAAMKLLLGELKTQEkkvnSDQLLL 107 Neisseria
WP_010879369  70 RCSSTAIVISNTGVELV----KEkgve 92  Archaeoglobus fulgidus
WP_002469399  75 EVNSNQITILGKEVKLAv--nKEPKLI 99  Staphylococcus epidermidis
WP_011007092  70 RAIDTAIRIGPPPPAR------KNVDL 90  Pyrobaculum aerophilum
WP_031680802  78 --VAAVTFYGRGRLVSA----EE-FVF 97  Mycobacterium tuberculosis
WP_011019678  83 RCLRVARWVDAEGVR--------GLRF 101 Methanopyrus kandleri
WP_010916361  67 KSYIDNIIIGNDKGNT------SNMI- 86  Thermoplasma volcanium
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