Conserved Protein Domain Family
put_DNA_pack

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TIGR01560: put_DNA_pack 
uncharacterized phage protein (possible DNA packaging)
This model describes a small (~ 100 amino acids) protein found in phage and in putative prophage regions of a number of bacterial genomes. Members have been annotated in some cases as a possible DNA packaging protein, but the source of this annotation was not traced during construction of this model. [Mobile and extrachromosomal element functions, Prophage functions]
Statistics
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PSSM-Id: 130623
View PSSM: TIGR01560
Aligned: 7 rows
Threshold Bit Score: 81.2738
Threshold Setting Gi: 446979567
Created: 8-Oct-2014
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
CAB52522       7 ITDGLKRSLgYLDEDTslDEGLQKRMssaLIAAESYVQHAIGTDVKDfyiSEENKPLYTLVCNALAASYVQNPVSITSGA 86  Lactobacillus p...
BAB80829       3 SLEEMKQYL-RIDYPD--DDELITSL---IQQAQIYIDSCCGINYKL---HTDKVNLANLLIKKMVSDQYDNRGLYLDSK 73  Clostridium per...
AAL97428       7 LLDSVKLYC-KIDFDF--EDDIIKEM---IESAQEQICFAIEEGSTAg--TFKESAKFALAVKKQVKEEYDHRGLSADSF 78  Streptococcus p...
AAK79854       3 TLDQLKLSL-RIDTSD--DDTLLTLF---MQTASDYIKGSIGNGVTG---FYDSNPRFDTALILLTDHYYKTRSATDETD 73  Clostridium ace...
BAA31882       7 ELKLLKKHC-KIDHNS--EDDLLEIY---YSWAFHEIASAVTDEPSKyidWFKSHPLFARATYPLASYYFENRIAYLDRD 80  Staphylococcus ...
WP_000134113   7 TLEEVKLHC-RIDGDE--EDQLISGY---IAASLEACQIHIGRRFDD---GLEFTPAIKIGCMMFIAHLYENRQIVADNA 77  Escherichia coli
WP_001056823   4 MLDVVKKAV-RISHSAl-DDELEDLI---EASRYDLKLSGVSHLKAN----DDTDPLIKRAIITYVKANFISDAKEAERF 74  Bacillus cereus...
CAB52522      87 VVNVDIVTNAIIGQLRGRYA 106 Lactobacillus phage phiadh
BAB80829      74 KNGYDRMSSTILELLSNCEG 93  Clostridium perfringens str. 13
AAL97428      79 RYPLANGVLNIIHQLRLRGD 98  Streptococcus pyogenes MGAS8232
AAK79854      74 LKKVPFGVTTLILQLKGDYL 93  Clostridium acetobutylicum ATCC 824
BAA31882      81 LSLAPHMVLSTVHKLRGSFE 100 Staphylococcus phage PVL
WP_000134113  78 KTRVPMTIGALWTAYRDVGV 97  Escherichia coli
WP_001056823  75 LA----SYNMLKNHLTLAGD 90  Bacillus cereus group
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