Conserved Protein Domain Family
sm_term_P27
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TIGR01558: sm_term_P27 
phage terminase, small subunit, putative, P27 family
This model describes a distinct family of phage (and integrated prophage) putative terminase small subunit. Members tend to be adjacent to the phage terminase large subunit gene. [Mobile and extrachromosomal element functions, Prophage functions]
Links
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Statistics
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PSSM-Id: 273691
Aligned: 7 rows
Threshold Bit Score: 130.616
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
CAB52517      13 QAPKWLGTYGKYLWPKLTAYLNKSNKIIRADEYLIQQYCSAYDIYRQAYEDLQKHGIQQKVYKTSlspvdgsvvsrdfqg 92  Lactobacillus p...
CAB58451      36 NVPKHFGKMGRYWHERIAGELDKVGVLTRLDAKALELLIEAYVEYRTHCDTLETEGYTYRTDQGL--------------- 100 Xenorhabdus nem...
AAL40274      45 EPPDWIVGEARDMWERVVPLLCGQKILQVTDLHIVEIFCAAYGNWRTAQDDLTRNGPVVDSSQGS--------------- 109 Burkholderia ph...
BAB80823      72 RTPTTLSKEGKKVYKNLVGELRESNILNNLDIEILLTTVDSILRMQECKDIIDKTGVILTKEDGT--------------- 136 Clostridium per...
BAA36627      40 KAPSYLPKDLKREFKKIADELKNIGIMTNLDVDALARFLFAQKQYLEMTEVLLETPITALVEDDDgnkf-------evan 112 Bacillus phage ...
CAA07101      32 RVPAHLKATGKDVWRNVWQAGMG-AYSPDTDRNVILRYCELHDRRADLLSLIEADGYMSEGYNGQ--------------- 95  Streptomyces ph...
WP_003913837  43 DAPDWLDAEALAEWRRVAPTLERLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGv-------------- 108 Mycobacterium t...

CAB52517      93 FKKNPAYNMMSDSLGRLNTIGKQLGLSPQARSKLmelAGPEeDKKsvAESMKEF 146 Lactobacillus phage phiadh
CAB58451     101 IKAHPAAGMKADAWKRIHAMLSAFGMSPSSRSRV---NIAG-ENK--DDPLTEL 148 Xenorhabdus nematophila F1
AAL40274     110 PMKNPAATVVKEAAAQMASFGAMLGLDPASRQRLv---gAK-PKTp-DNPFAKL 158 Burkholderia phage phiE125
BAB80823     137 LYRNPATTIYKDYNAIYNKCCMELGLSPSSRSKLsliNVNAkAKE--NDPLLAA 188 Clostridium perfringens str. 13
BAA36627     113 KTYSDLLINQDKLFKQCRQASSDLGLTISSRCKLv-iPK-KdDGKpkSKEEERF 164 Bacillus phage phi105
CAA07101      96 PVAHPMLRYVESTEKELRSIETAIGFTPEARMRLg-iVA-AeARKv-AAGPEDF 146 Streptomyces phage phiC31
WP_003913837 109 VHRNPAVTVAETARMHLLRLASEFGLTPAAEQRLa---VAPgD-D--GDGLNPF 156 Mycobacterium tuberculosis
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