Conserved Protein Domain Family
portal_PBSX

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TIGR01540: portal_PBSX 
phage portal protein, PBSX family
This model represents one of several distantly related families of phage portal protein. This protein forms a hole, or portal, that enables DNA passage during packaging and ejection. It also forms the junction between the phage head (capsid) and the tail proteins. It functions as a dodecamer of a single polypeptide of average mol. wt. of 40-90 KDa. This family shows clear homology to TIGR01537. The alignment for this group was trimmed of poorly alignable N-terminal sequence of about 50 residues and of C-terminal regions present in some but not all members of up 180 residues. [Mobile and extrachromosomal element functions, Prophage functions]
Statistics
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PSSM-Id: 273680
Aligned: 4 rows
Threshold Bit Score: 408.908
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAG39958  34 YVEPKVHPLVLLSLLQVNPYHASACSIKANDILRTgylidgd---------------------dggveelLRACRPSFEF 92  Methanothermobacter...
CAD09435  52 WYEPPVSFDGLARTFRAAVHHSSPIAVKCNILTST-----------------------------------YIPHPLLSQQ 96  Salmonella enterica...
AAK37797  47 CYLPPVNRHALAKLPHQNAQHGGILHSRANMVSSL-----------------------------------YEGGKALSRM 91  Haemophilus phage HP2
P54325    36 IIAPPYNIIELKTIAEYSTILQQCIDAYRVNITGFgfdveytfdvnasdvdqakkkraekdwarleafykCLHFDESAEM 115 Bacillus subtilis s...
AAG39958  93 ILLQALEDLQVFNYCTLEVVRDDQGEPVRLDYIPAHTVRVHrdgsr----ymqtWDGIHVTYFKDYRyEgevnpdNGEDQ 168 Methanothermobacter...
CAD09435  97 AFSRFVQDYLVFGNAYLEKRTNRFGEIIALEPALAKYTRRG-------------LDLDTYWFVQYGM-T------TQPYQ 156 Salmonella enterica...
AAK37797  92 DMRALCLNLIQFGDVGLLKVRNGFGQVVRLVPLSSLYLRVR-------------KDGGYSYLMKKSLyD------TAQEI 152 Haemophilus phage HP2
P54325   116 ILGYAIEDREKTGNGFMEVLRDGAGKPAGIEYLDVKYMRVCgagepvevsfvyeENGKMKRIKRQKRfR------KYVQM 189 Bacillus subtilis s...
AAG39958 169 DGvgANEIIFIHLPSPI----------------------------CSYYGVPRYLSAAPSILAMQKIDEYNYAFFDNYTI 220 Methanothermobacter...
CAD09435 157 FT--KGSIFHLMEPDIN----------------------------QEIYGLPGYLSAIPSALLNESATLFRRKYYINGSH 206 Salmonella enterica...
AAK37797 153 YRydAKDIIFIKLYDPM----------------------------QQVYGSPDYVGGIQSALLNSDATVFRRRYFSNGAH 204 Haemophilus phage HP2
P54325   190 IN--GKKVFFKEYGDPRkmdirtgeyvntlaekyqaneaihlkigSGVYGVPRWIGNIVNLYGARKAEELNFMYFKQGRH 267 Bacillus subtilis s...
AAG39958 221 PSYVITVTGEFEDEMELGSDGEPTGRTVLQGLIEDNFKYLKEAPHtplvfsiPGgdt---veVTFTPLN-TSQKElSFRE 296 Methanothermobacter...
CAD09435 207 AGFIMYMTDAAQNQEDVNNLRNAMKSAKGPGNFRNLFMYSPNGKK-------DG--------LQIIPLSeVAAKD-EFLN 270 Salmonella enterica...
AAK37797 205 MGFILYSTDPDLTEEMEEEIARKISESKGVGNFRSMFVNIANGHP-------DG--------LKVIPIGdTGTKD-EFAN 268 Haemophilus phage HP2
P54325   268 VPAAITVENGMLSEASYRELQEYMNDLEGVENAHKFLLIEAEGIAkek--dlHGgeditpvsVEIKSLAeILQNDaLFLE 345 Bacillus subtilis s...
AAG39958 297 YAAEKKHDIAAAHMIDPYRLGITDVGPLGGNFAEVARRTYYESVVRPQQEIVSSVLTDFIQLKLDP 362 Methanothermobacter phage psiM100
CAD09435 271 IKNVSRDDMMAAHRVPPQMMGIMPNNVGGFGDVEKASRVFVRNELMPLQKRLQEMNDWLGKEAIQF 336 Salmonella enterica subsp. enteri...
AAK37797 269 IKNISAQDVLTAHRFPAGLSGIIPTNTGGLGDPLKYREVYHYDEVMPLQEIIAETINQDPEIKNLL 334 Haemophilus phage HP2
P54325   346 YDEKSRNKLRSAFRLPPLYTG--EAQEYNRATADTARKITEEQVFQPERKTLVNKLNTLLLPELNI 409 Bacillus subtilis subsp. subtilis...
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