2JMZ,2IN9,2LCJ


Conserved Protein Domain Family
intein_Nterm
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TIGR01445: intein_Nterm 
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intein N-terminal splicing region
This model is based on interated search results, starting with a curated collection of intein N-terminal splicing regions from InBase, the New England Biolabs Intein Database, as presented on its web site. It is designed to recognize inteins but not the related region of the sonic hedgehog protein.
Links
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Statistics
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PSSM-Id: 273629
Aligned: 51 rows
Threshold Bit Score: 40.7646
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
2JMZ_A          9 LAYDEPIYLS-DGn---iINIGEFVDKFfkkyknsikkedngfgwidigneniYIKSF---NKl-SLIieDKRILr-vWR 79   Methanocaldoc...
Q58454        262 FHPDEVLFID-RGrglecITFKELFELEdkd--------------------nvKILSF---DGekLSL--KKLKLa--SK 313  Methanocaldoc...
Q58095         99 LTSNSKILTD-DGy---yIKLEKLKEKLdl---------------------hiKIYNTe--EGe--KS--SNILFv--SE 145  Methanocaldoc...
Q58446         77 LPYEEKIIIK-EGefikpVEIGKLVDEMierfgfekign----sevcdlpidiYALSLd---Qd-EKV--HWKRIiscIR 145  Methanocaldoc...
Q58191        406 LAYDEPIYLS-DGn---iINIGEFVDKFfkkyknsikkedngfgwidigneniYIKSFn---KlsLII--EDKRIlrvWR 476  Methanocaldoc...
Q58192        101 VDYNEPIIIKeNGei-kvVKIGELIDKIiensenirreg----ileiakckgiEVIAFn---Sn-YKF--KFMPVsevSR 169  Methanocaldoc...
Q58242       1060 LPYDEKILIF-ENneyklVKIGEFVEKYlnrykdraityg--dnnievyikdeNIYAPsf-dKd-GKI--VLKPIthaIR 1132 Methanocaldoc...
WP_010868726  724 FTGDTRILTE-KGl----IPIEEIVHETgk---------------------kpKVVTH---AGl-KDI--IETYDn---- 767  Pyrococcus ab...
2LCJ_A          2 FPGDTRILVQiDGvp-qkITLRELYELFederyenmvy------vrkkpkreiKVYSIdleTGk-VVL--TDIEDv--IK 69   Pyrococcus ab...
AAO72750        2 LSFGTEILTVeYGp----LPIGKIVSEEinc--------------------svYSVDP---EG--RVY--TQAIAq--WH 48   synthetic con...

2JMZ_A         80 kKYSGKLIKITTKNRREITLTHDHPVYI 107  Methanocaldococcus jannaschii
Q58454        314 rYYNDDLITLRFNLGREIKITKDHPVVI 341  Methanocaldococcus jannaschii DSM 2661
Q58095        146 rYADeKIIRIKTESGRVLEGSKDHPVLT 173  Methanocaldococcus jannaschii DSM 2661
Q58446        146 hKHNGKLIKIKTKSGREITATPYHSFVI 173  Methanocaldococcus jannaschii DSM 2661
Q58191        477 kKYSGKLIKITTKNRREITLTHDHPVYI 504  Methanocaldococcus jannaschii DSM 2661
Q58192        170 hPVS-EMFEIVVEGNKKVRVTRSHSVFT 196  Methanocaldococcus jannaschii DSM 2661
Q58242       1133 hRGK-EIYEIELESGKKVRVTGDHSVFT 1159 Methanocaldococcus jannaschii DSM 2661
WP_010868726  768 --GEMEVFRVTTEDGYELKVTGDHKFLV 793  Pyrococcus abyssi
2LCJ_A         70 aPATdHLIRFELEDGRSFETTVDHPVLV 97   Pyrococcus abyssi GE5
AAO72750       49 dRGEQEVLEYELEDGSVIRATSDHRFLT 76   synthetic construct
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