Conserved Protein Domain Family
trpB_rel

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TIGR01415: trpB_rel 
pyridoxal-phosphate dependent TrpB-like enzyme
This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found. [Unknown function, Enzymes of unknown specificity]
Statistics
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PSSM-Id: 273609
Aligned: 6 rows
Threshold Bit Score: 691.151
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
O67409        11 IPKKWLNILPLLPEPLEPPLDPETM-EPVKPEKLLAIFPEPLVEQEVSDKEWIDIPEEVLDIYSLW-RPTPLHRAKNLEE 88  Aquifex aeolicu...
Q9WZ09        12 IPKHWYNVLADLPFKLDPPLDPETK-QPISPEKLSVIFPMSLIEQEVSEERFIEIPEPVLKEYAVY-RPTPLIRATFLEE 89  Thermotoga mari...
O27520        12 IPKKWYNINPDLPSPLPEPKNPEGG-K--NIENLPRVFSRGVLEQEMSMERWIKIPREVMDVYKMIgRPTPLFRAKGLEE 88  Methanothermoba...
Q9Y8T5         4 VPLRWYNIAADLPEPLPPLRDPEGLrEESRIALLSRILPSRLIEDEYILARWVDIPGEVRKALARIgRPTPLIRAEGLEK 83  Aeropyrum perni...
WP_010867703  21 IPRRWYNILPDLPEPLDPPLDPETE-EPIDIEKLKRIFAEELVKQEISRERYIEIPGELRKLYSKIgRPTPLFRATNLEK 99  Pyrococcus abyssi
WP_010901091  11 MPDHWYNILPDLPEELPTPRDETGE----AFDTLKKAVPAKVLEYEFSGERYPKIPDEILERYMQVgRPTPIIRAKKLEE 86  Thermoplasma ac...
O67409        89 FLGTP--AKIFYKNESVSPPGSHKPNTAVAQAYYNKISGVKRLTTETGAGQWGSALSFATQFFDLQCRVYMVRVSYNQKP 166 Aquifex aeolicu...
Q9WZ09        90 YLQTP--ARIYYKYEGVSPTGSHKPNTAIAQAYYNKIEGVKRLVTETGAGQWGSALSYAGAKFGLEVKVFMVKVSYQQKP 167 Thermotoga mari...
O27520        89 MLDTP--ARIYYKREDYSPTGSHKLNTAIAQAYYARKDGAERLTTETGAGQWGTALSLACSLMDLQCKVYMVRVSFNQKP 166 Methanothermoba...
Q9Y8T5        84 VLGVKgrVRIYYKSEAVLPTGSHKINTAIAQAYYAKLDGAKEIVTETGAGQWGLAASTAAALMGLKATVFMTASSFKSKI 163 Aeropyrum perni...
WP_010867703 100 LLGTP--ARIYFKYEGATVTGSHKINTALAQAYYAKKQGIERLVTETGAGQWGTALSLAGALLGLKVRVYMARASYQQKP 177 Pyrococcus abyssi
WP_010901091  87 LLGGN--LKIFLKMESYTYSGSHKINSALAHVFFAREEGAKFVSTETGAGQWGSAVALASALFHMESHIFMVRTSFYAKP 164 Thermoplasma ac...
O67409       167 YRRILMETWKGEVIPSPSPYTNAGRKYYEEN-PEHPGSLGIAISEAIEEAASREDTKYSLGSVLNHVLLHQTVIGLEAKK 245 Aquifex aeolicu...
Q9WZ09       168 MRKYMMNLFGGKVTPSPSEETNFGRKILSED-PDNPGSLGIAISEALEVAVSDPNTKYSLGSVLNHVLLHQTVIGLEIKK 246 Thermotoga mari...
O27520       167 FRKTIMQLYGGEVVPSPSNHTEFGRRMLKED-PEHPGSLGIAISEAMEEALQEENVYYSLGSVLNHVLLHQTVIGLETKK 245 Methanothermoba...
Q9Y8T5       164 QRRLLMEAQGARVISSPSKLTDTGREALEEYgSTHPGSLGLAIAEAVEYTLESGDRRYLPGSVLEAVLMHQTVIGLEALD 243 Aeropyrum perni...
WP_010867703 178 YRKTLMRIYGAEVFPSPSENTEVGKRFLKED-PNHPGSLGIAISEAIEDVLKDEKARYSLGSVLNHVLMHQTVIGLEAKE 256 Pyrococcus abyssi
WP_010901091 165 YRKYMMYMYGAHPHPSPSEFTEYGREVLKRM-PDTPGSLGLAISEAIHYALDNG-GKYIAGSVINSDILFKTIAGMEAKK 242 Thermoplasma ac...
O67409       246 QMEEAGYYPDVIIGAVGGGSNFAGLSFPFLADVL-RGDkrkeDLKVLAVEPEACPTLTKGEYKYDFGDSVGLTPLIKMYT 324 Aquifex aeolicu...
Q9WZ09       247 QLELIGEKPDILLGCHGGGSNFGGTILPFVPDKL-SGR----DIRFVACEPAACPSLTKGNYDYDFGDTAGLTPLLKMYT 321 Thermotoga mari...
O27520       246 QLEIAGETPDIMIGCVGGGSNFGGAIFPFVKDKL-DGKl---DCEFIAAEPKSCPTLTAGEYRYDFGDTAGMTPLLKMYT 321 Methanothermoba...
Q9Y8T5       244 QLPEE---PDVVVACVGGGSNFGGFTYPMIGARL-RGEgf-eKTRFIAAESTAAPKLTRGEYRYDGLDSSLILPLAKMYT 318 Aeropyrum perni...
WP_010867703 257 QMEEFEE-PDVIIGCVGGGSNFAGLAYPFVKDVL-DGKs---EYEFIAVEPKAAPTMTRGVYTYDYGDSAGLTPKLKMHT 331 Pyrococcus abyssi
WP_010901091 243 QMEMAGEDPDYIVGVVGGGSNYAALAFPFLADELsSGKi---RRTYIASGSKEVPKMTEGEYRYDYPDTGKVLPLLKMYT 319 Thermoplasma ac...
O67409       325 LGHDFVPSPIHAGGLRYHGDAPLVCKLYNLGYIDAVAYKQTEVFEAAVTFARTEGIVPAPESAHAIKAAIDEALKCKETG 404 Aquifex aeolicu...
Q9WZ09       322 LGKDFIPPKIHAGGLRYHGSAPIIARLVKEGLVEAQAFDQDETFEAAKIFAKLEGIIPAPESAHAIAGAIREAKKAKEEG 401 Thermotoga mari...
O27520       322 LGHDFVPPSVHAGGLRYHGMSPQVALLVREGVINARAVPQHTIFESGVKFAKAEGVVPAPETCHAISVAIDEARKCRETG 401 Methanothermoba...
Q9Y8T5       319 LGHRYTPPPSHAAGLRYHGVSPSLSILRRLGLVEAEAIPQEEALASILLMARSEGVVPAPESSHAVALAARIARKLPDGS 398 Aeropyrum perni...
WP_010867703 332 LGHRYYVPPIHAGGLRYHGLAPTLSVLINHGIVKPIAYHQTEVFEAAVLFAKAEGIVPAPESAHAVKAVIDKALEARREG 411 Pyrococcus abyssi
WP_010901091 320 IGYDFIPPAVYAGGLRYHAVAPTLSLLMNKGIVSARDYDQEEAFKWARIFSETEGYIPAPETSHALPILKEIADKNR--G 397 Thermoplasma ac...
O67409       405 EEKVILFNLSGHGYFDLSAYD 425 Aquifex aeolicus VF5
Q9WZ09       402 KERVIVFTLSGHGLLDLTAYV 422 Thermotoga maritima MSB8
O27520       402 EEKTIVISFSGHGLLDLKGYG 422 Methanothermobacter thermautotrophicus str. Delta H
Q9Y8T5       399 ---VVAFNLSGHGLLDLDALQ 416 Aeropyrum pernix K1
WP_010867703 412 KEMVILFNLSGHGLLDLKGYE 432 Pyrococcus abyssi
WP_010901091 398 EKKTVLVSFSGHGLLDLGNYA 418 Thermoplasma acidophilum
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