Conserved Protein Domain Family
FlhA

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TIGR01398: FlhA 
flagellar biosynthesis protein FlhA
This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model. [Cellular processes, Chemotaxis and motility]
Statistics
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PSSM-Id: 273599
Aligned: 14 rows
Threshold Bit Score: 891.229
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
O06758        23 SKDLALVVFVIAILAIIIVPLPPFVLDFLLTISIALSVLIILIGLYIDKPTDFSAFPTLLLIVTLYRLALNVATTRMILT 102 Helicobacter py...
P35620         3 TRDLSVLISVVLIVAMLVIPFPPWLLSILIIINISLALIVLLTTMNMQEALQFSIFPSLLLLLTLFRLGLNVSTTRSILS 82  Bacillus subtil...
O67265         3 GKEFWIILAVVLILSAIIIPIPALLLDLLLTLSITFSLTVLLLTFFIKNPLEFSSFPSVLLLGTLLRLSLNIAAARRILL 82  Aquifex aeolicu...
AAD19733      15 GRTAILPVAILVLVGLMVVPVPTAVLDIGFISNITISLAVLMVSLNAAKPLDFSSFPTVLLFATLLRLSLNVASTRVVLV 94  Zymomonas mobil...
Q56338        10 TTDAFVAISVLVVVFSIVVPLPTQILDALMAFNLIFNLLILLMVLFVEKPTDFSVFPSLLLTSTVFGLGLNVSSTRLILT 89  Treponema palli...
Q03845        24 RGEMGLALGVVGIIVLLIIPVPAPLLDVLLAISLTGSVLILMTAILIKKPLEFTSFPTVLLVTTLFRLGLNIASTRLILS 103 Caulobacter cre...
WP_011714595  28 YSDLYMAVGVIVVMAVMIIPLPSELLDFFLSINIAIAIVILLTTIYIHKPLDFSSFPSVLLLATMFRLALNIATTRLILL 107 Magnetococcus m...
WP_004080658   3 NVDIIVSLMIVAIVLLMVLPVPDRMLDFFQILNITLSMIILFSTMYIRNALELSSFPTLLLVVTLFRLGLNVASTRLILL 82  Thermotoga
WP_011045939  11 SPTVLLAIALMAIIVMMILPMPAWVLDIGLAASFALAILIFTLTLFIERPLDFSAFPTILLASLMLRLSLNVSSTKLIIG 90  Ruegeria pomeroyi
WP_011812743  11 AKSLTIVGFLVCILAIIIVPLPSPILDFFLALSIALSVLIILISIYIPKPTDLTTFPTLILIITLFRLSLNIATTRMILS 90  Campylobacter j...
O06758       103 QGYkgpsaVSDIITAFGEFSVS----GNYVIGAIIFSILVLVNLLVVTNGSTRVTEVRARFALDAMPGKQMAIDADLNSG 178 Helicobacter py...
P35620        83 HGE-----GGKVVETFGNFVVG----GNVLVGLVVFIILIIIQFIVITKGAERVSEVAARFTLDAMPGKQMSIDADLNAG 153 Bacillus subtil...
O67265        83 HGHegthaAGKVIEAFGKLVAG----GDVVVGLIVFLIFIVINFIVITKGAERISEVAARFTLDALPGKQMSIDADLNAG 158 Aquifex aeolicu...
AAD19733      95 NGHtganaAGMVIEIFGHFLIG----EHYVVGIFIFAILMIINLVVVTKGAGRVSEVSARFTLDAMPGKQMAIDADLNAG 170 Zymomonas mobil...
Q56338        90 LGDr---fSGYMIRAFSSFVVGgsgtQGLVIGFTVFIILIAVQAFVITKGATRIAEVAARFTLDFNATKSMSIDAEYNAG 166 Treponema palli...
Q03845       104 HGQegtggAGAVIEAFGHLMMQ----GNFVIGVIVFIILIVVNFMVVTKGSGRIAEVAARFTLDSMPGKQMAIDADLSTG 179 Caulobacter cre...
WP_011714595 108 HGGegesaAGEVIRAFGQFVVG----GNYVVGVIIFSILVIINFIVITKGAGRIAEVAARFTLDKMPGKQMAIDADLNSG 183 Magnetococcus m...
WP_004080658  83 EGPk---fQGRVIRTFGDFVVK----GDYVVGLIVFFILVIIQFIVITRGAERIAEVAARFTLDAMPGKQMSVDADLNSG 155 Thermotoga
WP_011045939  91 QGHtgpnaAGDVIEGFAQFVMG----GSVFLGLVVFGVLLIVNFMVITKGAARMAEVGARFALDGMPGKQLAIDSDMSAG 166 Ruegeria pomeroyi
WP_011812743  91 EGQngpeaVSEIIAAFGEFVVG----GNMVIGVIVFCILVLINFMVVTKGSTRVSEVQARFTLDAMPGKQMAIDADLNAG 166 Campylobacter j...
O06758       179 LIDDKEAKKRRAALSQEADFYGAMDGASKFVKGDAIASIIITLINIIGGFLVGVFQRDMSLSFSASTFTILTIGDGLVGQ 258 Helicobacter py...
P35620       154 MITEQEAKHRREKVAREADFYGAMDGASKFVKGDAIAGIIIVMINIIFGIVIGMLQQGMSIQEAASHFTMLTVGDGIVSQ 233 Bacillus subtil...
O67265       159 LITEEEAKRRRQELEKEANFYAAMDGASKFIRGDAIAALIILFLSLVGGLLIGIGIRGMDLASAVKTYTILSIGEGLASQ 238 Aquifex aeolicu...
AAD19733     171 LITPEEAKNRRQEVATEAGFYGSMDGASKFVKGDAVAGVLILLVNIIGGLILGVFSYNMTLSDAASNYVQLAIGDALVAQ 250 Zymomonas mobil...
Q56338       167 VITEEEARERKRQIQREADFFGAMDGASKFVSGNVKIGIFITIVNVIAGLIVGVIFRREGFQAALQTYTNLTIGDGLLAQ 246 Treponema palli...
Q03845       180 LISQDEAKIRRKELEQESTFFGAMDGASKFVKGDAIAGLIITAINIIGGIIIGVVQHKMPFGDAASTYTIMTIGDGLVSQ 259 Caulobacter cre...
WP_011714595 184 LITEDEARRRRSEIEQESEFFGAMDGASKFVRGDAIAGILITLINIVAGFIIGVAQLDLSAAQSAQIYTILTVGDGLVAQ 263 Magnetococcus m...
WP_004080658 156 LITEEEARKRREDIRREADFYGAMDGASKFVRGDAIASIIIVFINIIGGLLIGMLRHGMSLAEAAQEYVILTVGDGLAAQ 235 Thermotoga
WP_011045939 167 AIDHQEAKARRELEQQETTFFGSLDGASKFVKGDAIAGLLITLLNLVMGLIMGVVVHGMPMSAAFETYAILTVGDGLVSQ 246 Ruegeria pomeroyi
WP_011812743 167 LIDEQTARARRQEVIAEANFYGAMDGSSKFIKGDAVAGIIITIINIIGGFLIGSFQHDMALSDAASTYTILTIGDGLVSQ 246 Campylobacter j...
O06758       259 IPALIIATATGIVATRTT-QneEEDFASKLITQLTNKSKTLVIVGAILLLFATIPGLPTFSLAFVGTLFLFIAWLISR-- 335 Helicobacter py...
P35620       234 IPALLISTATGIVVTRAA-S--EGNLGHDITGQLFAYPKLLYVAAATIMLLGIFTPIGILLTGPLAGLLAFGAYTLSK-- 308 Bacillus subtil...
O67265       239 VPALLLSTAAGVLTTKMS-S--RENLGEAISEELTKQPRALLFSAGVLGFIGLIPGLPTLPFLAMS-AILAGAYYLVQ-- 312 Aquifex aeolicu...
AAD19733     251 IPSFLLSFATASIVTRVT-S--SFDLTGQIVSQFNS-ARAWTPVAVILGFLGIVPGMPHFVILP-AAGLSGWTAWKLH-- 323 Zymomonas mobil...
Q56338       247 LPSLLLSVATGFIVTRSS-D--QGSFGQNVQEQFSKSALVYFIGSGALIVMAVLPGFPHSILFFMAVCFAFVGLQLRK-- 321 Treponema palli...
Q03845       260 IPALIISIAAGMVVSKAG-V--EGSADKALTTQLAMNPVGLGMVSASSGIIALIPGMPIFPFAAMALAAGALAYKRVQ-- 334 Caulobacter cre...
WP_011714595 264 IPTLVISAGAGFLVTRAS-G--DANMADHVSQQMTAQPRVILMSAVVLGLLAIIPGMPTVAFGLLAIAMGSWSWYLFR-- 338 Magnetococcus m...
WP_004080658 236 IPALLVSTATGIIVSRAA-S--KENLGKDLVTELSRETKVLLLTGGVLIFLGIFTPIPFFS-AILGGALIFLAVYTSR-- 309 Thermotoga
WP_011045939 247 IPAVIISIASALLLARGG-T--QGATDNALFAQLGKHPAALATVALLMVLFALVPGLPFLPFISGGAVLGYAAWRMRL-- 321 Ruegeria pomeroyi
WP_011812743 247 IPGLITSTATAIIITRASkD--EENFAEGTLTQLLSEYRTLLIVGFVLFIFALVPGLPTLSLGFMALVFLSLGYLTKQvk 324 Campylobacter j...
O06758       336 --------------------EGkdglltklenylsqkfgldlsekphssKIKPHTPTTRAKTQEELKREEEQAIDEVLKI 395 Helicobacter py...
P35620       309 --------------------SG---------------------------KEKEEVDEILEEEAEVDELKSPESVVQLLHI 341 Bacillus subtil...
O67265       313 --------------------QS---------------------------LKERELKELEKLAQEKTKEKEEEGEELIPQP 345 Aquifex aeolicu...
AAD19733     324 --------------------KS---------------------------AQAEAAKKEAPPPVVVPDTPPPVSWNDVSDG 356 Zymomonas mobil...
Q56338       322 --------------------RErv------------------------hVQEHEMQKSSDKKGMQQTQDSTSEMGPIVPL 357 Treponema palli...
Q03845       335 --------------------DAk--------------------------KPKALDPADLEAAAPSEPEEE--PISASLAI 366 Caulobacter cre...
WP_011714595 339 --------------------RA---------------------------EQRDEAVQHKAMAEAEAEAEAEEPIESYLAL 371 Magnetococcus m...
WP_004080658 310 --------------------AV---------------------------PQEELAGPAPAERPGGPVLSTPEEVSEIIQS 342 Thermotoga
WP_011045939 322 --------------------KQ---------------------------KQEAESAARITEEQTPVARQG---IGDILDL 351 Ruegeria pomeroyi
WP_011812743 325 egkidittvkkskpsaavasQS---------------------------GAGGTTAAPAKKSEEEILKEEEHKINDILKV 377 Campylobacter j...
O06758       396 EFLELALGYQLISLADMKQGGDLLERIRGIRKKIASDYGFLMPQIRIRDNLQLPPTHYEIKLKGIVIGEGMVMPDKFLAM 475 Helicobacter py...
P35620       342 DPIEFEFGYGLIPLADANQGGDLLDRIVMIRRQLALELGLVIPVVRIRDNIALQPNEYRLKIKGNEVAKGELLLDHYLAM 421 Bacillus subtil...
O67265       346 EPITLEIGYALIPLVDESQGGQIPKKIKNLRKQIAKEYGVIVPLIHIRDNLRLKPNEYRILIKGIEIDRYELMPGHYLAV 425 Aquifex aeolicu...
AAD19733     357 AVLSLEIGYGLIPLVDDRKKAPLMARVTGIRRQLSRDLGFVIPLVRVRDNLSLGANSYRISVSGVVTGEDEVWPDQLMAL 436 Zymomonas mobil...
Q56338       358 DPLSLELGYGLIPLVDKEKGAELLSRITVIRKDAALDLGLVAPKIRIIDNMRLDPSSYCFKIQGLEVARGKLRLGWFLAI 437 Treponema palli...
Q03845       367 DDVKIELGYGLLTLINDLDGRKLTDQIRALRKTLASEYGFVMPPVRILDNMRLANQGYAIRIKEMEAGAGEVRLGCLMCM 446 Caulobacter cre...
WP_011714595 372 DLLRLDVGYGLISLVDETQHGDLLDKIRSIRRQFAQDMGFVVPPIHIKDNLQLKPGEYSYLVKGVEVGQGELRPGSYLAM 451 Magnetococcus m...
WP_004080658 343 DTVEVEIGYGLIPLADPSQGGDLLDRITSIRKQLAFELGLVVSPIRVRDSVLLKPNEYSIKIRGSEVARYELVPNRLLAI 422 Thermotoga
WP_011045939 352 DDVHLEFAPDLVGMALDP-GTGLDARIANMRTHVASIYGLILPDIRLTDQAELPQGTYVIKVQGVEQVRGVLHPDLVLAL 430 Ruegeria pomeroyi
WP_011812743 378 EILELELGYGLIKLAEN----ELTERIRSMRRSIAESLGFLMPKIRIRDNLRLKPNEYSFKLKGVSIASAEIYPDKYLAM 453 Campylobacter j...
O06758       476 NTGFVNKEIEGIPTKEPAFGMDALWIETKNKEEAIIQGYTIIDPSTVIATHTSELVKKYAEDFITKDEVKSLLERL---- 551 Helicobacter py...
P35620       422 SPTPEDDLIEGIETVEPSFGLPAKWISEAVKDEADMLGYTVVDPASVVSTHITEKIKQHAHELIGRQETKQLIDHL---- 497 Bacillus subtil...
O67265       426 NLGNAKGPIEGIETYDPAFKIKAYWITEDKKEEAQKLGYMVVDAETVLITHLSEVIKRNLHELLTRNEVMELIEML---- 501 Aquifex aeolicu...
AAD19733     437 NNGDADGTLVGRVSKDPTFGLNAVWIPENRRSDAIVAGYTVVDAATVIATHLNQSIINNAADLFGMDDAQKLLDML---- 512 Zymomonas mobil...
Q56338       438 KSGQVTEEVPGERTIDPTFGLPAVWISEENRDRAERVGYTVVAPSAIIATHLTQVIRTNAADILGRQNVQMIIDAL---- 513 Treponema palli...
Q03845       447 DPRGGQVELPGEHVREPAFGLPATWIADDLREEATFRGYTVVDPATVLTTHLTEILKENMADLLSYAEVQKLLKEL---- 522 Caulobacter cre...
WP_011714595 452 EGGDVTGQIHGIATVEPAFGLPAQWIASGERERAEMLGYTVVDASTVLATHITEMVHNHAHEMLTRQEVQNLLDLV---- 527 Magnetococcus m...
WP_004080658 423 NPGTAKEKIPGIPTREPAFNLEAYWIEEWRKEEAQQKGYTVVDPPTVFATHLSEVLRRHADELLGFKELELLIEGL---- 498 Thermotoga
WP_011045939 431 MTDHPDALPAGEDVTEPVYGAPARWILPKDQEAAALSGATIVSPPEILATHLLEVIKQNFARLLTLKSLRRLLSEMtrls 510 Ruegeria pomeroyi
WP_011812743 454 DSGFITEEIEGIATKEPAFNSDALWIDANLKDEATLNGYIVIDPASVISTHMSELIKAHASELLTRQEVQNLLDKV---- 529 Campylobacter j...
O06758       552 ----AKDYPTIVEESK--KIPTGAIRSVLQALLHEKIPIKDMLTILETITDIAPLVQn-DVNILTEQVRARLSRVITNAF 624 Helicobacter py...
P35620       498 ----KESYPVLVEEVTpnPLSVGDIQKVLAKLLKEKVSIRNLVTIFETLADYGKLTT--DSDLLTEYTRQALAKQITAQF 571 Bacillus subtil...
O67265       502 ----SKKYPKVVKEIVpeQVPISIIHRVLQNLLREGIPVNDLLTILETLADYIEQTK--DPDLLTEYVRQALSKRITRMY 575 Aquifex aeolicu...
AAD19733     513 ----KETAPQLVSAVTpqPLSLAVITLICRSLLWEGVSLHEFRRIVEAMVDAVREET--EPNALLEAIRIRIGGIIVQSI 586 Zymomonas mobil...
Q56338       514 ----RKEYPAVVDDVTq-KCPLGKIQKVLQGLLREQVSIRNTVAIFETLADFASTSDtvPVPILIEKVRQRLGRQICLQY 588 Treponema palli...
Q03845       523 ----PETQKKLVDDLIpgTVTATTVQRVLQSLLRERVSIRDLPQILEGVGEAAPHTA--SVTQLVEQVRARLARQLCWAN 596 Caulobacter cre...
WP_011714595 528 ----SKNQPKLVEELIpnIVSLGDVQKVLQGLLRERVSIRDMGTILETLADYGKIIK--QPQQLVELVRQSLSRSIVRRY 601 Magnetococcus m...
WP_004080658 499 ----KEKFPKLVEDLIpdVLKPAEIKKVLQRLLKEGVSIRNLPTIFETLLESAEKSK--DIDYLVESVRKALKRQIASMV 572 Thermotoga
WP_011045939 511 dpvrSEANQKLLDELIpdKVPIDTLHAVLRLLLEERVSIRNMPLILEAVAEARLATT--QPEAICEHVRQRLGFQLVAEM 588 Ruegeria pomeroyi
WP_011812743 530 ----KNDYPIIVEGALg-VAPVSLIQKILKDLLKHHIPIKDMLTILESVSDIAEVSK--SFDMIIEHVRASLARMITNMY 602 Campylobacter j...
O06758       625 KSEDGRLKFLTFSTDSEQFLLNKLRENGTSKSL--L--LNVGELQKLIEVVSEEAMKVLQKGIa---PVILIVEPNLRKA 697 Helicobacter py...
P35620       572 AKENEVLKVVTCSGRVEKAIADGVQQTEHGNYL--S--LEPDISESIVRSVAKEAEQLSLRQE----TAILLCSPPVRMY 643 Bacillus subtil...
O67265       576 LT-NGTLYAIALSPKVEAKLVKFLKENREDE-------FIDYVLNTLLPKIKNEIVKFAQYGA----VPVLLTSGEVRRF 643 Aquifex aeolicu...
AAD19733     587 VPVKMPLPVVTFEPKLEALLSQGV-RSGPQAAH--P--FEPALANRIVTALESAAQPLLSNGQ----RFAIVTSPVIRRP 657 Zymomonas mobil...
Q56338       589 ADEQNVLHVMRLDSSLETFLSEKI-ALTVDSLS--I--LTLSLDEQ--RQVLQAVRTVFVPTRqegyIPVLLTTDTIRSA 661 Treponema palli...
Q03845       597 RGDDGALPIITLSADWEQAFAEALIGP--GDDKqlA--LPPSRLQDFIRGVRDSFERAALAGE----APVLLTSPGVRPY 668 Caulobacter cre...
WP_011714595 602 LDDEGTLTALVLGPDAENLVAEAIVSGDYGSYL--S--LSPRSAQQLLTRVRSEVEKAATVVV----QPVLITGSRVRPF 673 Magnetococcus m...
WP_004080658 573 RSEDGKIHAIVLERDLEQKLLESLKEIGEEREL--L--LNPEVSRELMNKISNELGNLMKKGY----QPVIVCSSRIRPY 644 Thermotoga
WP_011045939 589 KRADGSIPLVQLAPEWEDAFAT-YQVDGAGGGL--DiaLPPDLFNKLADGVAKRLSQTAGQGI----FAALVTSTRRRRF 661 Ruegeria pomeroyi
WP_011812743 603 LDDKGNLDIFILDSASSAVLMENVQFRDGSYHL--P--LSVAQTGTLVDTLRAEVAAVANGRIk---PFILCVEPQLRKF 675 Campylobacter j...
O06758       698 LSNQMEQARIDVIVLSHAELDPNSNFEALGTI 729 Helicobacter pylori 26695
P35620       644 VKQLLERYFPDLPVLSYNELEANVEVQSIGVV 675 Bacillus subtilis subsp. subtilis str. 168
O67265       644 VRKTIEPYLSELAVLSYNELEKQVNIKIIGIV 675 Aquifex aeolicus VF5
AAD19733     658 LARLLKPHFSEISVLSFLEIPDGKPVEVVAVV 689 Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
Q56338       662 MWNLFFSDRIEIAVMSYKEVSTDMRIETVGVV 693 Treponema pallidum subsp. pallidum str. Nichols
Q03845       669 VRSIIERFRGQTVVMSQNEIHPRARLKTVGMV 700 Caulobacter crescentus CB15
WP_011714595 674 VKQALEGVLPHLVVLSQNEIPANVSVSSLGSI 705 Magnetococcus marinus
WP_004080658 645 FSRYVMRTIPGVYVISYDEIPDDYTLQIEGVV 676 Thermotoga
WP_011045939 662 LRTILRARGIPNPVLSFEEIGMEARPALVGQV 693 Ruegeria pomeroyi
WP_011812743 676 IADICYNFSINIVVLSFAEIAENTNFNTEGII 707 Campylobacter jejuni
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