Conserved Protein Domain Family
POMP_repeat
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TIGR01376: POMP_repeat 
Chlamydial polymorphic outer membrane protein repeat
This model represents a repeat region of about 27 residues that appears from twice to over twenty times in Chlamydial polymorphic outer membrane proteins (POMP). Characteristic motifs in the repeat are FXXN and GGAI. Except for a few apparently truncated examples, Chlamydial proteins have this repeat region if and only if they also have the autotransporter beta-domain (pfam03797) at the C-terminus, with Phe as the C-terminal residue. This repeat is observed, but is very rare, outside the Chlamydias.
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Statistics
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PSSM-Id: 273587
Aligned: 66 rows
Threshold Bit Score: 28.9666
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Q9Z883        210 NSGAIQITSNSSG-SGGGIFSTqTLTIS 236  Chlamydia pneumoniae
Q9Z813        245 NFQTTSFFSNKAS-FGGAVYSR-YCNLY 270  Chlamydia pneumoniae
O84418        481 NSHRLQFLKNSSDkQGGGIYGEdNITLS 508  Chlamydia trachomatis D/UW-3/CX
WP_011006175  474 SSTLTQFNGNNGKtGGGGIYCLgDITLT 501  Chlamydophila caviae
ETR80439      616 DSHRLQFTSNKAAdEGGGLYCGdDVTLT 643  Chlamydia pneumoniae B21
WP_010883095  105 NFSSINFTGNQSTgLGGLIYGK-DIVFQ 131  Chlamydia pneumoniae
ETR80439      833 KVITGSVSQNTATeSGGGIYAK-DIQLQ 859  Chlamydia pneumoniae B21
WP_010883089  185 NTSSITFTSNSAKkLGGAIYSS-AAASI 211  Chlamydia pneumoniae
ETR80439      435 CTGTTLFSGNTANkSGGGIYAVgQVTLE 462  Chlamydia pneumoniae B21
WP_010231245  386 SSKEVVFDHNSATkNGGAIFGEeEIALE 413  Chlamydia muridarum
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