2GYA,1VW4,1NKW


Conserved Protein Domain Family
rpmD_bact

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TIGR01308: rpmD_bact 
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ribosomal protein L30, bacterial/organelle
This model describes bacterial (and organellar) 50S ribosomal protein L30. Homologous ribosomal proteins of the eukaryotic cytosol and of the archaea differ substantially in architecture, from bacterial L30 and also from each other, and are described by separate models. [Protein synthesis, Ribosomal proteins: synthesis and modification]
Statistics
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PSSM-Id: 130375
View PSSM: TIGR01308
Aligned: 13 rows
Threshold Bit Score: 56.1666
Threshold Setting Gi: 7674266
Created: 8-Oct-2014
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2GYA_X        2 IKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKVEE 56  Escherichia coli
Q9ZCS3        8 IKITQIKSAIGCKYDQRFTLIGLGLNKINKSVILKNTNSIRGMVEKVKHLLKIEN 62  Rickettsia prowazekii str. Madrid E
P74909        4 LKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVEV 58  Thermus thermophilus
Q9XD18        4 IIVTQVKSSIGVKKEHKLTLHALGLRRTGQQRKHKISPQLQGMLNSVRHLIKVEK 58  Leptospira interrogans serovar Lai str. 5...
P20084        4 YKVTLSRSLIGVPHTTKSIVKSLGLGKRGSIVYKKVNPAIAGSLAKVKELVKVEV 58  Saccharomyces cerevisiae S288c
O51449       15 VQVFLVRSLIGKLNKKVKVLKALGLNKIGDKKVHFLNESIKGMLNETINMILLSE 69  Borrelia burgdorferi B31
BAB08583     19 LYITLVRGLPGTRKLHRRTLEAMGLRRCHRTVLHSNNSSIRGMIDQVLFLYLFIY 73  thale cress
P46789        4 LKITQVKSYIGSKQNHRDTLRSLGLKGINTQVVKEDRPEFRGMVHTVRHLVTVEE 58  Streptomyces coelicolor A3(2)
WP_011712543  5 IKVKLVRSFVGRPDKQRRICASLGLHKMNRVKELPDNAAIRGQINKVCHLVSVVD 59  Magnetococcus marinus
WP_003129921  4 IKITLVNSPIGRIPAQRKTVKALGLGKLNSSVVKEGSPAILGMVNSISHLVKVEE 58  Bacilli
WP_006205449  9 ITVEQIGSPIRRPKEQRATLVGLGLNKMHKQRTLEDTPSVRGMIAAVQHLVRVVD 63  Mesorhizobium
1VW4_U        4 YKVTLSRSLIGVPHTTKSIVKSLGLGKRGSIVYKKVNPAIAGSLAKVKELVKVEV 58  baker's yeast
1NKW_X        1 MKIKLVRSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEVQE 55  Deinococcus radiodurans
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