Conserved Protein Domain Family
alt_nitrog_alph

?
TIGR01284: alt_nitrog_alph 
nitrogenase alpha chain
This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms. [Central intermediary metabolism, Nitrogen fixation]
Statistics
?
PSSM-Id: 188127
Aligned: 3 rows
Threshold Bit Score: 816.386
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
AAA22172   4 VLLECDKDIPERQKHIYLKAPNEDTREfLPIANAATIPGTLSERGCAFCGAKLVIGGVLKDTIQMIHGPLGCA-YDTWhT 82  Azotobacter vinelandii
Q50788     4 ELFGVDAEIPDRKKHIYVKKQGDPEGD-IPACNTTTIPGCMTERGCAFAGAKGVITGAIKDALHVIHSPVGCTaYGYG-T 81  Methanothermobacter...
P16266     4 HEFECSKVIPERKKHAVIKGKGETLADaLPQGYLNTIPGSISERGCAYCGAKHVIGTPMKDVIHISHGPVGCT-YDTWqT 82  Azotobacter vinelandii
AAA22172  83 KRYPT-----DN-----GHFNMKYVWSTDMKESHVVFGGEKRLEKSMHEAFDEMPDIKRMIVYTTCPTALIGDDIKAVAK 152 Azotobacter vinelandii
Q50788    82 KRYPTsqempDGsmfpiEKFNLKYITGTDLSESDVVFGGMDKLKRCILEAVREFPEANAVYTYATCTTGLIGDDIDAISR 161 Methanothermobacter...
P16266    83 KRYIS-----DN-----DNFQLKYTYATDVKEKHIVFGAEKLLKQNIIEAFKAFPQIKRMTIYQTCATALIGDDINAIAE 152 Azotobacter vinelandii
AAA22172 153 KVMKDRPdVDVFTVECPGFSGVSQSKGHHVLNIGWINEKVETMEKEITSEYTMNFIGDFNIQGDTQLLQTYWDRLGIQVV 232 Azotobacter vinelandii
Q50788   162 EVSEEIG-KDVVAINAPGFAGPTQSKGHQVANYTLFEDLVGTAEPPRTTEYDVNLIGEYNIDGDLWVLKKYFEEMGINVL 240 Methanothermobacter...
P16266   153 EVMEEMPeVDIFVCNSPGFAGPSQSGGHHKINIAWINQKVGTVEPEITGDHVINYVGEYNIQGDQEVMVDYFKRMGIQVL 232 Azotobacter vinelandii
AAA22172 233 AHFTGNGTYDDLRCMHQAQLNVVNCARSSGYIANELKKRYGIPRLDIDSWGFNYMAEGIRKICAFFGIEEKGEELIAEEY 312 Azotobacter vinelandii
Q50788   241 STFTGDCCHDEIKWMHRAKLSLVRCQRSANYIAKLLEERYGVPYMKVDFFGIEYCRKNLMAIGEYFGIPERAERVIEDRM 320 Methanothermobacter...
P16266   233 STFTGNGSYDGLRAMHRAHLNVLECARSAEYICNELRVRYGIPRLDIDGFGFKPLADSLRKIGMFFGIEDRAKAIIDEEV 312 Azotobacter vinelandii
AAA22172 313 AKWKPKLDWYKERLQGKKMAIWTGGPRLWHWTKSVEDDLGVQVVAMSSKFGHEEDFEKVIARGKEGTYYIDDGNELEFFE 392 Azotobacter vinelandii
Q50788   321 KKIGPEIQYFKDKLRGKRVWVFSGGPKNWHLPRPLEDELGMEVVAVSTMFEHEDGYEKIKKRVREGTVIVDDPNSLELEE 400 Methanothermobacter...
P16266   313 ARWKPELDWYKERLMGKKVCLWPGGSKLWHWAHVIEEEMGLKVVSVYIKFGHQGDMEKGIARCGEGTLAIDDPNELEGLE 392 Azotobacter vinelandii
AAA22172 393 IIDLVKPDVIFTGPRVGELVKKLHIPYVNGHGYHNGPYMGFEGFVNLARDMYNAVHNPLRHLAAVDIR 460 Azotobacter vinelandii
Q50788   401 IIEKYRPDIILSGIKEKYLAHKLGVPCILIHSYENGPYIGFEGFLNLARDMYAAIYNPVWDLLEFEED 468 Methanothermobacter marburgensi...
P16266   393 ALEMLKPDIILTGKRPGEVAKKVRVPYLNAHAYHNGPYKGFEGWVRFARDIYNAIYSPIHQLSGIDIT 460 Azotobacter vinelandii
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap