Conserved Protein Domain Family
rmlA_long

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TIGR01208: rmlA_long 
glucose-1-phosphate thymidylylransferase, long form
The family of known and putative glucose-1-phosphate thymidyltransferase (also called dTDP-glucose synthase) shows a deep split into a short form (see TIGR01207) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. This form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Alternate name: dTDP-D-glucose synthase
Statistics
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PSSM-Id: 273500
Aligned: 6 rows
Threshold Bit Score: 537.37
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_010873445  30 KALILSGGKGTRLRPLTYTGAKQLVPVANKPILWYGIEAIAKAGITDIGIIISPETGEEIKTITGNGEKFGIQITYILQS 109 Synechocystis s...
WP_004080744   3 KAIVLCAGKGTRLRPLTFTTAKHLIPIANKPILFYSLENIARAGIEEVGIVVSPHNAEEFKSIVGTGENFGLRISYIIQE 82  Thermotoga
WP_010877833   2 KGVLLHGGAGTRLRPLTFTGPKQLIPVANKPVSQYCLEDMIGAGIKEVAIILGETYPEMVEEHYGDGSRFGCKITYIHQG 81  Archaeoglobus f...
WP_027479720   2 KALIPAAGLGTRLRPLTFTRPKPVLRVAGQPIIRHAIRTLTEAGITDIGIVVSDVTRDEIQHAVR--EIRDVKLTLINQH 79  Deinococcus rad...
WP_010868292   2 KALILSGGYGTRLRPLTYSQQKQLIPVANKPVLFYAIEDVIEAGIHEIGIIVGP-NKEQVIETVKS-VDWDANIEFIYQG 79  Pyrococcus abyssi
WP_010866207   3 KGLILAAGEGSRLRPFTFSRPKHLIPLLGKPIIQYAIDDLVSINVRDIGVVVGY-FGDKIKEFLGEDSRFGAKFTYIVQK 81  Aeropyrum pernix
WP_010873445 110 EPLGLAHAVKTAADF-LQDSPFVMYLGDNLIQDHLEQFLAHFQAKSLDSLILLRRVSNPSAFGVATV-NdQGkVLALVEK 187 Synechocystis s...
WP_004080744  83 EPKGLAHAVWVSREF-LGDEDFMMYLGDNLILEDLGKFVKDFENSDYAASILLSPVKDPTRFGVAVM-E-GDrVIKVVEK 159 Thermotoga
WP_010877833  82 KPLGIAHAVYLAKDF-VGDEKFVVYLGDNLIQDGIKEYVKRFDEEDFDAFILLKEVEDPRAFGVAKF-E-GErLVGLIEK 158 Archaeoglobus f...
WP_027479720  80 DQLGLGHAVLTAREW-VGQDDFCVYLGDNLFEFGARPFIESFHQKHPAALIALVKVADPTAFGVAELd--GEqITRLVEK 156 Deinococcus rad...
WP_010868292  80 EPKGLAHAILVARDY-LGNDDFVMYLGDNILREGIVRHKEHFEKSDYDASILLCEVPNPQQFGVAELsEdGKtIKRLIEK 158 Pyrococcus abyssi
WP_010866207  82 KRLGIAHAIYRAIKQgFIDKEFIVYLGDNILSGGISRHVKSWGEAGSEVHILLTKVRDPGRFGIAVL-RdGK-ILKLVEK 159 Aeropyrum pernix
WP_010873445 188 PEHPPSNLALVGLYFFAP--TIHQAIANIEPSARGELEITDAIQYLISHDYRVESLQLKGWWLDTGKKDDLLAANQIILD 265 Synechocystis s...
WP_004080744 160 PKTPPSNLAIVGLYLFRN--KIFEGIKNIKPSWRGELEITDAIEYLIEKGEKVRGYIVYGWWKDTGKPEDLLEANRKILM 237 Thermotoga
WP_010877833 159 PKEPPSNYAVIGVYMFKP--VVFDIIKDLKPSWRGELEITDTLQKMIENGYNVGYAKLKGWWFDTGKAEDILKVNATILD 236 Archaeoglobus f...
WP_027479720 157 PKDPPSNLAVAGLYCFTP--QIFEVLDVMPPSARGEYEITDGIQGLIERGQTVVGQRVEGWWKDTGRPADLLDANRLLLE 234 Deinococcus rad...
WP_010868292 159 PKHPPSNLALVGIYFFRP--IIHEAVRHIKPSWRNELEITDAIQWLIDNGYKVGWTKVTGWWKDTGKPEDLLEANRLVLD 236 Pyrococcus abyssi
WP_010866207 160 PQEHISDLAVVGVYMFRDpeLVAKAFSTLKPSWRGEYEITDLIQWFVDKGYKVTFSLVTGWWKDVGTYEGLLDAIYLLLD 239 Aeropyrum pernix
WP_010873445 266 tL-VEKNIQGtVDDQSKISGRVTIGPHSQI-INSVIRGPVAIGPNCHLENC-FIGPYSSIAEGVKIRDADLEHSVVLQGA 342 Synechocystis s...
WP_004080744 238 -E-TTEELLGeMDDKSSIQGPVRIGKASKI-VNSVIRGPAVIGENCFIKNS-YVGPYSSIGNRVILEDCEVENSIVMDEC 313 Thermotoga
WP_010877833 237 -ErAKRSVKG-EVLASQIEGRVEVGEGAKI-TNSIVRGPAVIGEDCIIENS-FIGPYTSVGERTVIKNSSLEYCIVLSES 312 Archaeoglobus f...
WP_027479720 235 -Q-IETDVQG-DMEGSRMTGRVIVPASSKV-LRSKIVGPVIIGEDVIIEDA-YIGPFTSIGRGTVIRNAEIEHSSVDSGV 309 Deinococcus rad...
WP_010868292 237 -E-IEREIK--VETRAKIIGRVKIEEGAKIdENTIIKGPAVIGRNAVIRNA-YIGPYTSVGNNVVIEDTEVEDSIIMDGS 311 Pyrococcus abyssi
WP_010866207 240 -N-VKPRVEG--KIEGEVRGRVVVEEGA-I-VEGTVHGPAYIGKDVYIGRSgLVEHYVSMEQGSRIISGTVARSMILDES 313 Aeropyrum pernix
WP_010873445 343 SIVAIQQRIVDSVIGKNAKIFPAPRRPQALRFLIGNDSQVEL 384 Synechocystis sp. PCC 6803
WP_004080744 314 SITGVEKRIDSSILGKGVSVKGSQKRPASLNLILGNMSRVEL 355 Thermotoga
WP_010877833 313 IIEGVE-RIEESLIGRKVRIRKNDRK-RFLRFTIGDYSEILL 352 Archaeoglobus fulgidus
WP_027479720 310 VIENVQTRLQDCLIGVKAQVRGGRTLPKTHKLTISDASVVEL 351 Deinococcus radiodurans
WP_010868292 312 VIIGAG-RIIESIIGKEVRIVRGDGHPLGRRLIVGDKSQLTL 352 Pyrococcus abyssi
WP_010866207 314 ELYLNKARLVDSVVGPKSIIKSNREIYGDIKLVISDYSKVFL 355 Aeropyrum pernix
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