3J3V,2AW4,1NKW


Conserved Protein Domain Family
rplB_bact

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TIGR01171: rplB_bact 
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ribosomal protein L2, bacterial/organellar
This model distinguishes bacterial and organellar ribosomal protein L2 from its counterparts in the archaea nad in the eukaryotic cytosol. Plant mitochondrial examples tend to have long, variable inserts. [Protein synthesis, Ribosomal proteins: synthesis and modification]
Statistics
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PSSM-Id: 273481
Aligned: 20 rows
Threshold Bit Score: 446.755
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3J3V_C         3 IKKYKPTSNGRRGMTTSDFAEITTd------------KPEKSLLAPLHKKGGRNNQGKLTVRHQGGGHKRQYRVIDFKRD 70  Bacillus subtil...
P56030         3 IKTYKPYTPSRRFMSVLDSKDITAk------------SSVKGLLTKLKATAGRNNNGRITSRHKERGAKKLYRIIDFKRN 70  Helicobacter py...
AAF83965       3 LIKFKPTSPGRRSAARVVTPNIHKg------------SPHAALLEPQSKTGGRNHHGRITVRHIGGGCKQRYRVIDFKRD 70  Xylella fastidi...
Q9ZCQ8         3 LKNFNPITPSLRELVQVDKTNLWKg------------RPLKTLTKGMSKTGGRNQQGRITSWHRGGGHKKLYRVIDFKRK 70  Rickettsia prow...
Q9Z7R0         2 FKKFKPVTPGTRQLVLPAFDELTTrgelrgtkskrslRPNKKLSFFKKSSGGRDNLGHISCRHRGGGAKQLYRVVDFKRN 81  Chlamydia pneum...
P73317         3 IRNYRPMTPGTRQASVSDFTEITKs------------KPEKSLTTNRHDQKGRNNRGVITSRHRGGGHKKLYRIIDFKRN 70  Synechocystis s...
P51311         3 IRLYRAYTPGTRNRTVSTFSEITTd------------KPEKSLINKHHFCKGRNNRGVITCRHKGGGHKQRYRLIDFKRN 70  Porphyra purpurea
P06378         3 IRLYRAYTPGTRNRSVPKFDEIVKc------------QPQKKLTYNKHIKKGRNNRGIITSQHRGGGHKRLYRKIDFQRN 70  liverwort
WP_002221850   3 IVKMKPTSAGRRGMVRVVTEGLYKg------------APYAPLLEKKNSTAGRNNNGHITTRHKGGGHKHHYRVVDFKRN 70  Neisseria menin...
WP_002825501   3 IKTYKPYTPSRRYITGLSSEDITAk------------PSVRSLLVKLPAHAGRNSYGRITSRHKEAGAKKLYRIIDFKRR 70  Campylobacter
3J3V_C        71 KDGIPGRVATVEYDPNRSANIALINYADGEKRYILAPKGIQVGTEIMSG-P-EADIKVGNALPLINIPVGTVVHNIELKP 148 Bacillus subtil...
P56030        71 KYNIEGKVAAIEYDPYRNARIALVVYPDGDKRYILQPSGLKVGDSVIAAeG-GLDIKVGFAMKLKNIPIGTVVHNIEMHP 149 Helicobacter py...
AAF83965      71 KEAIPARVERIEYDPNRTAHIALLCYVDGERCYIIAPKGLKEGDKIISG-P-NVPIKLGNSLPLRNIPVGTTVHAVELKP 148 Xylella fastidi...
Q9ZCQ8        71 KIDISAIVERIEYDPNRTAFIALIKYDDGEYSYILAPQKLSIGDRVISS-Q-AADIKIGNCLPLKSIPIGTTLHNVEMKI 148 Rickettsia prow...
Q9Z7R0        82 KDGITAKVVTVEYDPNRSAYIALLSYEDGEKRYILAPKGIQRGDVVVSG-E-GSPFKPGCCMTLKSIPLGLSVHNIEMRP 159 Chlamydia pneum...
P73317        71 KQNIPARVAAIEYDPNRNARIALLFYTDGEKRYILAPAGLQVGMTVIAG-E-EAPFEIGNTLPLSRIPLGSEIHNVELVA 148 Synechocystis s...
P51311        71 RHNIIAKVASIEYDPNRNARIALLHYLDGEKRYILHPRSLSVGAIVVSG-P-MAPIEVGNALPLSTIPLGTAVHNIELRP 148 Porphyra purpurea
P06378        71 KKYITGKIKTIEYDPNRNTYICLINYEDGEKRYILYPRGIKLDDTIISS-E-EAPILIGNTLPLTNMPLGTAIHNIEITP 148 liverwort
WP_002221850  71 KDGIPAKVERIEYDPNRTAFIALLCYADGERRYIIAPRGIQAGAVLVSG-A-EAAIKVGNTLPIRNIPVGTTIHCIEMKP 148 Neisseria menin...
WP_002825501  71 KFGIEGKVEAIEYDPYRNCRIALIAYKDGEKRYILQPRGLSVGDIVAAA-EsGLDIKPGNAMKLKNIPVGTIVHNVELKP 149 Campylobacter
3J3V_C       149 GKGGQLVRSAGTSAQVLGKEGKYVLVRLNSGEVRMILSACRASIGQVGNEQHELINIGKAGRSRWKGIRPTVRGSVMNPN 228 Bacillus subtil...
P56030       150 GAGGQLARSAGMSAQIMGRENKYTIIRMPSSEMRYILSECMASVGVVGNEDFINVSIGKAGRNRHRGIRPQTRGSAMNPV 229 Helicobacter py...
AAF83965     149 SKGAQMARSAGSSVQLVAREGVYATLRLRSGEMRRVLAECRATIGEVGNEEHNLRKLGKAGAKRWLGVRPTVRGAAMNPV 228 Xylella fastidi...
Q9ZCQ8       149 GKGGQIARSAGTSVELVGKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLGWRPHVRGVAMNPV 228 Rickettsia prow...
Q9Z7R0       160 SSGGKLVRSAGLAAQVIAKSPGYVTLKMPSGEFRMLNEGCRATIGEVSNADHNLRVDGKAGRRRWMGVRPTVRGTAMNPV 239 Chlamydia pneum...
P73317       149 GRGGQMVRSAGAFAQVVAKEGDYVTIKLPSKEVRMVRKECVATLGRVSNAEFRNLKLGKAGRKRHLGRRPHVRGSVMNPC 228 Synechocystis s...
P51311       149 YCGGQIVRSAGTYAQIVAKEGNFVTVKLPSSEVRMIRKECYATIGQVGNIDASNITLGKAGRSRWLGKRPTVRGVVMNPV 228 Porphyra purpurea
P06378       149 GKGGQLVRAAGTVAKIIAKEGQLVTLRLPSGEIRLISQKCLATIGQIGNVDVNNLRIGKAGSKRWLGKRPKVRGVVMNPI 228 liverwort
WP_002221850 149 GKGAQIARSAGASAVLLAKEGAYAQVRLRSGEVRKINVDCRATIGEVGNEEQSLKKIGKAGANRWRGIRPTVRGVVMNPV 228 Neisseria menin...
WP_002825501 150 GKGGQMIRSAGAYAQLMGKEEKYVILRLASGEMRQVLAECMASIGEVGNEEWANVTIGKAGRNRHRGIRPQTRGSAMNPV 229 Campylobacter
3J3V_C       229 DHPHGGG-EGRApIGr-KsPMSPWGKPTLGFKTRKKKNkSD--------------KFIVRRRKN 276 Bacillus subtilis subsp. subtil...
P56030       230 DHPHGGG-EGKTgTSg-H-PVSPWGTPAKGYKTRKKKA-SD--------------KLIISRKKH 275 Helicobacter pylori 26695
AAF83965     229 DHPHGGG-EAKSgQGnpH-PVTPWGVPTKGYKTRKNKR-TQ--------------QFIIRGRRG 275 Xylella fastidiosa 9a5c
Q9ZCQ8       229 DHPHGGG-EGKTsGGr-H-PVTPWGFSTKGKKTRKNKR-TS--------------KFIVKKRK- 273 Rickettsia prowazekii str. Madr...
Q9Z7R0       240 DHPHGGG-EGRH-NGy-I-PRTPWGKVTKGLKTRDKNK-SN--------------KWIVKDRRK 284 Chlamydia pneumoniae
P73317       229 DHPHGGG-EGRApIGrsG-PVSPWGKPALGAKTRNKKKrSS--------------ALIVRRRTK 276 Synechocystis sp. PCC 6803 subs...
P51311       229 DHPHGGGgEGKSpIGrsR-PVTPWGKPALGVKTRNPNKySNpyvllvvnkvyltyNLILKYNVE 291 Porphyra purpurea
P06378       229 DHPHGGG-EGRApIGrkK-PLTPWGHPALGKRSRKNNKySD--------------TLILRRRKN 276 liverwort
WP_002221850 229 DHPHGGG-EGRTgEAr-E-PVSPWGTPAKGYRTRNNKR-TD--------------NMIVRRRYS 274 Neisseria meningitidis
WP_002825501 230 DHPHGGG-EGKKnSGr-H-PVTPWGKPTKGAKTRRKKA-SD--------------KLIISRRKG 275 Campylobacter
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