Conserved Protein Domain Family
mtrD

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TIGR01112: mtrD 
N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit D
This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit D in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methy-transfer reaction to drive sodium-ion pump. Archaea domain, have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase. [Transport and binding proteins, Cations and iron carrying compounds, Energy metabolism, Methanogenesis]
Statistics
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PSSM-Id: 273449
Aligned: 5 rows
Threshold Bit Score: 255.163
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
CAB41639   2 IDAILgniIWMaLITIGGVLISWSVHFVPVGGAPAAMAQATGIGTGTVQLAAGAGLTGLVSAGFMMn----vTDNLPLIL 77  Methanosarcina barkeri
P80183     1 MDPLL---LIG-AITAGGVLIGGGVHFVPVGGAPAAMATATGVGTGTAMLAAGAGLTGLITAAAMT------GQSPLMIM 70  Methanothermobacter...
O32864     1 MDKLI---AVLvLITLGSIMVNVGVHYVPVGGAPAAMATATGVGTGTTQLAAGSGLTGLITAAAMS------QKPFLVIL 71  Methanopyrus kandle...
P80653     2 IDAILgniLWMvFIIIGGVLISWGVHFVPVGGAPAAMAQATGVGTGTVQLATGAGLTGLVSAGFMMn----vTDNFPLIV 77  Methanosarcina maze...
Q58258     1 MDIVSa-iVPLiEMTIAGAIINASVHFIPVGGAPAAMATSTGVGTGTTQLAAGAGFTGLMGAAVMAsnvglsPIGMALIM 79  Methanocaldococcus ...
CAB41639  78 ASGSVGAMIMIAVTMIVGSIVYVYGVGVVPSSAKVKVDPITKYRQDLYVSQGTEGHGLPTVSYVSGIIGGGLGGIGGSLV 157 Methanosarcina barkeri
P80183    71 AAGAVGSMLMIGITMLVGNLIYVFGVGTVPVSAKVSVDPITGMEQEKYVTPGTEGHGLPTVCFVSGIIGGALGGIGGGLI 150 Methanothermobacter...
O32864    72 WNGALGAATMMAITMLVGNFIYVYGVGCPPCSAKVDKDPITGWDQEAYVTPGTEGHGIPTVSFVSGILGGLLGGSGGAMV 151 Methanopyrus kandle...
P80653    78 ASGAVGAMIMIAVTMIVGTWIYVYGVGCVPSSAKVKVDPITKYRQDLYVSQGTEGHGIPTVSFVSGVIGAALGGIGGSLI 157 Methanosarcina maze...
Q58258    80 ISGAVSSMIMLGVTMLIGQLIYVFGVGVVPAADKCEIDPITKDPQKPYVTPGTTGHGVPTVCFVSGLIGAALGGIGGALA 159 Methanocaldococcus ...
CAB41639 158 YYSLIEVGMSAGLEAVGVTNsvtghelvaVAAIFAIGIFFVNAVIPSYNIGGTIEGFHDPKFKKWPKAVVSSLVASI 234 Methanosarcina barkeri
P80183   151 YWALNEALKTLSYGAMGAAG---------VAAIFAVGIFFINAVIASYNIGGTIEGFHDPKFKRIGRGIVACLIASI 218 Methanothermobacter ma...
O32864   152 YYALYKVLG------MSAA----------LAGILAMGFFYANAVLASYNIGGTIEGYHDPKFTRLPKAVVCSLVFGI 212 Methanopyrus kandleri ...
P80653   158 YYSLIEVGVSVGLERVGVTSavtgnslvaVAAIFAIGIFLVNAVIPSYNIGGTIEGFHDPKFKKWPKAVISSVVASI 234 Methanosarcina mazei Go1
Q58258   160 YIALRKLGLDPG-----------------VAGMLAVGFFFINAVLASYNIGGTIEGFHDPKFKKMPNGVIASTVASL 219 Methanocaldococcus jan...
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