2ABK


Conserved Protein Domain Family
nth

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TIGR01083: nth 
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endonuclease III
This equivalog model identifes nth members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY. [DNA metabolism, DNA replication, recombination, and repair]
Statistics
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PSSM-Id: 273434
Aligned: 11 rows
Threshold Bit Score: 289.28
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2ABK_A         3 KAKRLEILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLY 82  Escherichia coli
WP_003676295   3 RHIRQEIFERFRAANPHPTTELNFNSPFELLIAVLLSAQATDVGVNKATAKLFPVADTPQAMLDLGLDGVMEYTKTIGLY 82  Neisseria cinerea
WP_005654382   3 KTKRIEILTRLREQNPHPTTELQYNSPFELLIAVILSAQATDKGVNKATEKLFPVANTPQAILDLGLDGLKSYIKTIGLF 82  Haemophilus inf...
WP_000781680  11 HQKAQQIKELLLKHYPNQTTELRHKNPYELLVATILSAQCTDARVNQITPKLFEKYPSVNDLALASLEEVKEIIKSVSYF 90  Helicobacter py...
WP_010880284  21 RRKAVEIVKRLEKVYLNPRLELEYENAFQLLVMAILAAQESDKVVNKVSKEFFKKYKTPQDIARANLEELEEDLKHINFY 100 Aquifex aeolicus
WP_004083173   3 eelAREIVKRFPRN--HKET-----DPFRVLISTVLSQRTRDENTEKASKKLFEVYRTPQELAKAKPEDLYDLIKESGMY 75  Thermotoga
WP_009967580   4 LKQIEFCLDKIGDMFPHAECELVHSNPFELVVAVALSAQCTDALVNRVTKTLFQKYKRPEDYLAVPLEELQQDIKSIGLY 83  Bacillus
WP_010886934  15 RARAPQVLSALGRLYPDARTELVFNTPFELLVATVLSAQATDVSVNAATPALFAAYPDAHALSQATADDIEPYIRSIGLY 94  Deinococcus rad...
WP_003917940  31 vrrarrmnralaqaFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFARYRTARDYAQADRTELESLIRPTGFY 110 Mycobacterium t...
WP_010872392  12 KQRATEILLILKKLYPGATCSLDYQTPVQLLVATILSAQCTDERVNKVTPALFQRYPDANALAYGDRQEIEELIHSTGFF 91  Synechocystis s...
WP_010882220   6 SKGVHAVFEQLHAANPQPQGELHWRNTFTLLVAVLLSAQATDKSVNKATAALFDVADTPQAMLALGEERLCSYIRTINLY 85  Treponema pallidum
2ABK_A        83 NSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFGWP-TIAVDTHIFRVCNRTQFAPGKN-VEQVE 160 Escherichia coli
WP_003676295  83 KTKSKHIMQTCRILLEKYNGEVPEDREALESLPGVGRKTANVVLNTAFGHP-VMAVDTHIFRVSNRTKIAPGKD-VREVE 160 Neisseria cinerea
WP_005654382  83 NSKAENIIKTCRDLIEKHNGEVPENREALEALAGVGRKTANVVLNTAFGHP-TIAVDTHIFRVCNRTNFAAGKD-VVKVE 160 Haemophilus inf...
WP_000781680  91 NNKSKHLISMAQKVVRDFKGVIPSTQKELMSLDGVGQKTANVVLSVCFDAN-CIAVDTHVFRATHRLGLSNAKD-PIKTE 168 Helicobacter py...
WP_010880284 101 RRKAKLIKECCEKLIELYKGEVPKSVGELVKLPGVGRKTANMVIGGAYNLP-AIIVDRHVHRVVERISLSKQKN-PDKME 178 Aquifex aeolicus
WP_004083173  76 RQKAERIVEISRILVEKYGGRVPDSLEELLKLPGVGRKTANIVLWVGFKKP-ALAVDTHVHRISNRLGWVKTRT-PEETE 153 Thermotoga
WP_009967580  84 RNKAKNIQKLSKMIIEDYGGEVPRDRDELVKLPGVGRKTANVVVSVAFGVP-AIAVDTHVERVSKRLGICRWKDsVLEVE 162 Bacillus
WP_010886934  95 RGKAKNLAALARLLVERHGGEVPNDFDAVVALPGAGRKTANVVLSNAYDYP-AIAVDTHVGRLARRLGLSVQTN-PDKVE 172 Deinococcus rad...
WP_003917940 111 RNKAASLIGLGQALVERFGGEVPATMDKLVTLPGVGRKTANVILGNAFGIP-GITVDTHFGRLVRRWRWTTAED-PVKVE 188 Mycobacterium t...
WP_010872392  92 RNKAKNIQGACRKIVEEFDGEVPQRMEELLTLPGVARKTANVVLAHAFGILaGVTVDTHVKRLSQRLGLTKATD-PIRIE 170 Synechocystis s...
WP_010882220  86 PTKARRIIALSAELIERFAAQVPCDAHALESLPGVGHKTANVVLNMGFGIP-TIAVDTHILRTAPRIGLSSGRT-PRAVE 163 Treponema pallidum
2ABK_A       161 EKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRC 194 Escherichia coli
WP_003676295 161 DKLMRFIPKEFLMDAHHWLILHGRYTCKALKPQC 194 Neisseria cinerea
WP_005654382 161 EKLLKVVPNEFKVDVHHWLILHGRYTCIARKPRC 194 Haemophilus influenzae
WP_000781680 169 EELSDLF-KDNLSKLHHALILFGRYTCKAKNPLC 201 Helicobacter pylori
WP_010880284 179 MELSEIVPQELWTKFSLLLLNHGKTICKARNPEC 212 Aquifex aeolicus
WP_004083173 154 EALKKLLPEDLWGPINGSMVEFGRRICKPQNPLC 187 Thermotoga
WP_009967580 163 KTLMRKVPKEDWSVTHHRLIFFGRYHCKAQSPRC 196 Bacillus
WP_010886934 173 ADLQKLFPRDRWVFLHHALILHGRRVCHARKPQC 206 Deinococcus radiodurans
WP_003917940 189 QAVGELIERKEWTLLSHRVIFHGRRVCHARRPAC 222 Mycobacterium tuberculosis
WP_010872392 171 RDLMKLIPQPDWENFSIHIIYHGRAVCAARKPLC 204 Synechocystis sp. PCC 6803
WP_010882220 164 RDLLVVTPREFRMHAHHWILLHGRYTCTARRPRC 197 Treponema pallidum
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