Conserved Protein Domain Family
topA_arch

?
TIGR01057: topA_arch 
DNA topoisomerase I, archaeal
This model describes topoisomerase I from archaea. These enzymes are involved in the control of DNA topology. DNA topoisomerase I belongs to the type I topoisomerases, which are ATP-independent. [DNA metabolism, DNA replication, recombination, and repair]
Statistics
?
PSSM-Id: 273420
Aligned: 4 rows
Threshold Bit Score: 955.044
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
O58356   5 IAEKPNVARKIAGALSERRp-iKKSLFGVPYYEIFREGKKLIVASAVGHLYGLAPKRD-VfG-YPIFDIEWVPVYIAeKG 81  Pyrococcus horikoshii...
Q59046  10 ICEKPSVAKKIANALGKAK---KKSIDGVPYYELERDGKKIIVASAVGHLFTLVEKENkEfGfYPVFDIKWVPASVD-KG 85  Methanocaldococcus ja...
O27661  13 ICEKPKSSEKIAGALFPDAm--KKKHGKVSYWEHVEGDKRVTIVSAVGHLYSLRPRQS---NeEHFFDLEWAPIHEIdKK 87  Methanothermobacter t...
Q9YB01   2 VAEKPKAAAKIAYALSDGRgvlRCSEYGVPYWIVRRDGAAIVVAPSAGHLFGPHTDSRg----FPVFDFEWRPIFEFdRG 77  Aeropyrum pernix K1
O58356  82 KEYAREYIKALSVLAKRVREFIVACDYDTEGEVIGYTALKYACGVDPr-vAKRMKFSALTKRDLLNAWRNLEpTINFGMA 160 Pyrococcus horikoshii...
Q59046  86 KEYVNKYIKALKKLSKDADEFYIATDWDIEGELIGYHALKYCCGREK---AKRMRFSSLTKKEIVRAFENPD-EIDYGLV 161 Methanocaldococcus ja...
O27661  88 KGYVKDYLNVIRKFAAGADRYIHACDYDIEGTLIGFNALKYGCGEEAlrkTSRMKFSTLTREEIQRAYKNPi-EVDYGQV 166 Methanothermobacter t...
Q9YB01  78 AGYLSKFYRMLSRILPGASLYVNACDYDIEGSVIGFKIIEAFGDVNR---ARRMKFSTLAPQDIRRAYARME-RLDVEMI 153 Aeropyrum pernix K1
O58356 161 NAGIARHILDWYWGVNLSRALTHAIKKASgKWVVLSTGRVQGPTLKFLVEREREIQSFVPRPYWVIKLIFEKNgqkFTAN 240 Pyrococcus horikoshii...
Q59046 162 DAGESRHILDWYFGINLSRALMNAIRAVN-RWKTMSVGRVQGPALAFLTERELEIKKFIPKPYWVIEALLKDN---LKAI 237 Methanocaldococcus ja...
O27661 167 DSGAARHILDFIFGVNISRSLMKSVKAATnRFIKLSAGRVQTPTLAILVEREKEIRDFKPVPYWIIRAELGEG---IIAE 243 Methanothermobacter t...
Q9YB01 154 EAGMARSEMDWLWGINVSRALMEAARRAAgRRVILSAGRVQSPTLVEAYRRWREINLHVPKASVAVKITAEKGggvFDAR 233 Aeropyrum pernix K1
O58356 241 YEKDKIWEEEEGKRIVLEVKKS-IPRVSNVEIKRQKRTPPHPFDLGTLQREAYSAFGFSPKKTLDIAQSLYEKGFSSYPR 319 Pyrococcus horikoshii...
Q59046 238 HEKEKFWNEKEAKNVYEKIKDEkSAKVVEIKKTKRKLKPLPPFDLGTLQREAYSYFKISPKETQEIAQKLYENALISYPR 317 Methanocaldococcus ja...
O27661 244 SKRGKIFKRELVDSILEKCQGS-DAEVKDVRVRDTIRKPPVPFDLGTLQSEAYRVFGFSPKKTQTIAQNLYTEGYTSYPR 322 Methanothermobacter t...
Q9YB01 234 PHGWKPQSLETARSIKSELRKNpWLAVEEVRSERSILRPPPAFNLGDLQKEANRILGLPPLRTQSIAEELYLEALISYPR 313 Aeropyrum pernix K1
O58356 320 TESQKLPRNINFRMIIQNLAK-MPQYRPYAHILLgL-PELKPVEGKKEDPAHPAIYPTgEIPRPgDLTKDEEKLYDMIVR 397 Pyrococcus horikoshii...
Q59046 318 TSSQKLPKDRKYLEDILNIIKnHPVYGKWAERIL-K-ENLKPVEGKKEDPAHPAIHIV-DIPKE-ELSEKEKEIYDLIAR 393 Methanocaldococcus ja...
O27661 323 TSSQKLPESIGYEKILKNLAK-NPRFGVHIERLR---GPLKPHEGKKEDDAHPAIHPTgLLPS--ELSKDEKKVYDLIVH 396 Methanothermobacter t...
Q9YB01 314 TNSQKLPPSINYRAILDKLAH-GPLGREARELLKeTgGVLRPVQGSKDDPAHPAIHPTgEKPSQ-RLSKEHMAVYELIVR 391 Aeropyrum pernix K1
O58356 398 RFLAVFMEPAIRESVKVTIRAGP-HKFFLSGGRTVKKGWLSVYgKYVKFEEVTLPEFFIGERIKVIQVKREKKKTKPPAR 476 Pyrococcus horikoshii...
Q59046 394 RTLAAFWDNAEREYLNVKIDIKG-EKFKLSGSRTVKEGWHEIY-YFPKFDEIELPPLKKNDIIKVEKITITRKETQPPKR 471 Methanocaldococcus ja...
O27661 397 RFISVFGEDAILQTMKVELEIGE-EEFSFSRKRVSKAGWMESY-PYTKMEDEEFPEISGGDSLAVRSVSADERETKPPAR 474 Methanothermobacter t...
Q9YB01 392 RFLAAFSREAIVSKSSVLLRDFQgRVWRAEGLRVEDLGWLKYY-HYSTPGEKPMPPLDRGDKARVVRVDVRVEWSQTPVR 470 Aeropyrum pernix K1
O58356 477 YSPAAVIKKMEDLGLGTKATRAQILETLYQRGYIEGKKSIKVTPLGMKVIETLEKYVPEIISVELTREFEKKMELIMEGR 556 Pyrococcus horikoshii...
Q59046 472 YTVASIIKELEKRGLGTKATRAEIIDKLIKRGYVIDDGSLKVTDLGISVIETLKRFCPEIIDEKMTRDLEEKLEKIQFRK 551 Methanocaldococcus ja...
O27661 475 YNEASLIRELERRGLGTKSTRADIIAKLYDRKYIEGKK-IRVSPLGENIIDTLTRYCEKIISEELTRQFERELEDIMRGK 553 Methanothermobacter t...
Q9YB01 471 LDKASLLRWMESVNIGTEGTRARIIETLYKRGYLEGSRKSEVTPLGEAVAVIIQTLFPELSKPDLTRRFESMIEDIRSGR 550 Aeropyrum pernix K1
O58356 557 LTKEEVIEEAKERLTKILEEFKKRELEIGIELAKIVVGEDevkplVVGKCPKCGGDLIVKYNKKTgkRFVGCSNWPKC 634 Pyrococcus horikoshii OT3
Q59046 552 IKKDDVLDEAEKRLRKILEEFKKKEEDIGIYLIKNLDATNkk-akIVGKCPKCGGDLILIRHKKG--RFVGCSNYPEC 626 Methanocaldococcus jann...
O27661 554 ISKDRVIDEAITEVRSILSDIEENLRDIGKELYRAYQDSR-----VVGECPACGGKLVIKYSPRNrsTFVGCSSYPDC 626 Methanothermobacter the...
Q9YB01 551 RTRQEVIDMSKKTISKLLESFLDRLDTAVREIGVSLGSVE-----VEAACHLCGRKAVS--AVSG---YRLCSHHMEA 618 Aeropyrum pernix K1
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap