Conserved Protein Domain Family
top6b

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TIGR01052: top6b 
DNA topoisomerase VI, B subunit
This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase). [DNA metabolism, DNA replication, recombination, and repair]
Statistics
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PSSM-Id: 273417
Aligned: 5 rows
Threshold Bit Score: 733.934
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
O74020   9 KE-FKVQSVSEFFRRNAAMLGYTGKIRSLTTIIHEAVTNSLDACEEAGILPTIRVEIEELGK-------EHYKVIVEDNG 80  Pyrococcus horikoshii...
O27088  10 DEgFQELTPSEFFRKNKQMLGFTGKIRSLTIVFHELITNSFDAAEEAGILPEIKIDLKRIGK-------DHYILRHQDNG 82  Methanothermobacter t...
Q9YE64  25 GEkYREMSVAEFFAKNKELAGFANPTRALYQTIRELVENSLDATDAKGILPWIHISIRQIEGsegrggrPRYTVTVEDNG 104 Aeropyrum pernix K1
O29605   2 SGkHREISVAEFFEKNKHILGYSNPAKAIITVVKEAVDNALDACEEAGILPDIFVRISKVDD--------HFKIVVEDNG 73  Archaeoglobus fulgidu...
Q58434  11 KE-FKEHSVAEFFRKNKHMLGYSGKIRSLTTIIHELVTNSLDACEEAGILPDIKVEIEKLGA-------DHYKVAVEDNG 82  Methanocaldococcus ja...
O74020  81 PGIPEEYIPHVFGKMLAGTKAHrNIQSRGQQGIGISGAVMFAQITTGKPTRVITSTG--GEIV--EAWVKIDVQKNEGKI 156 Pyrococcus horikoshii...
O27088  83 PGIPEKYIPKVFCTMFAGSKFR-NIQSRGQQGLGCSGCVLLSQMTTGKPVKVISGTMenGELKgvKMTLKMDVKKNQGLI 161 Methanothermobacter t...
Q9YE64 105 IGVPVTSMAMAFGKVLFSSKYv-IRQTRGMYGLGVKAAILYGQMTAGTPVEVYSATK--GSQYvyMMKLVIDVQRNEPRI 181 Aeropyrum pernix K1
O29605  74 PGIPREQIPKVFGKLLYGSRFHeIRQSRGQQGIGISAAVLYAQLTTGKPATVISKTP--DEDRakKVVLYINTKKNEPEI 151 Archaeoglobus fulgidu...
Q58434  83 PGIPLEFIPKVFGKMLAGSKMHrFIQSRGQQGIGAAGVLLFSQITTGKPLKIITSTGd-GNIY--EVEVKMNVEKNEGEI 159 Methanocaldococcus ja...
O74020 157 VKKVK--HPNPkgwRGTRIEMEVKDVKYVRSRQGVYWYLKLTAIANPHAYIELVEPDGkLVVFPRSSEEIPKPPVEMKPH 234 Pyrococcus horikoshii...
O27088 162 LEKEE--VEVDg--TGVCIELHFKDVSYSLSEQGAYEYIRRTMIANPHARIVFNDPTGnRYVFNRASDVIPPMPKEVLPH 237 Methanothermobacter t...
Q9YE64 182 LERGE--WNKRgswHGTRVTLSLEGDWSR-AKSKILEYIKRTAVIAPYAEIILETPDGeIYYFPRSTRKLPKPPRESKPH 258 Aeropyrum pernix K1
O29605 152 VEEGEeeWYLPs---GTKIELEVAGNYVRERKQSVYEYLRETSVINPHAKITFVEPDGtINEFKRVTDDIPQPPKSIKPH 228 Archaeoglobus fulgidu...
Q58434 160 VSKKV--RKGKw--RGTRVEGEFKEVSYNRGEFGPFEYLRRISLATPHAKIVLKDPYG-EVVFDRVVNELPKKPEEMKPH 234 Methanocaldococcus ja...
O74020 235 PKGVMVDDVYTMAHRSKRSSVKRFLVSEFSRISEKKIEELIKYVAairllkseqneeikeklrekl-------------- 300 Pyrococcus horikoshii...
O27088 238 PWGVTADDLIFMAKHTDKRRFGSMLKSNLSRMSSMKIKELEELTG----------------------------------- 282 Methanothermobacter t...
Q9YE64 259 PHGVDIEQLKSMLRSTRASTLREFLVKEFQSIGDKTAQDFLEKYGld--------------------------------- 305 Aeropyrum pernix K1
O29605 229 PHGIELGTLMSMLKSTRATTLRRFLKEEFVRVGEKIADDVLRKAGfs--------------------------------- 275 Archaeoglobus fulgidu...
Q58434 235 PYGLTTDELLYIARKTKSKKVSSMLVSELSRVTTKRIKELINYMLrdlilkkfkdsvfwnmvvscylnidiesylnkfkd 314 Methanocaldococcus ja...
O74020     --------------------------------------------------------------------------------     Pyrococcus horikoshii...
O27088     --------------------------------------------------------------------------------     Methanothermobacter t...
Q9YE64     --------------------------------------------------------------------------------     Aeropyrum pernix K1
O29605     --------------------------------------------------------------------------------     Archaeoglobus fulgidu...
Q58434 315 yitddeietvrmliknlpesldelkryalkyitmeylfnklseeeinklknhfkkipenfmewaeknylsatvvdelnkk 394 Methanocaldococcus ja...
O74020 301 ----------ingdvdsvlrsfgrkwkkevEKvakiMEKPPEKLTWQEAEEIVE----AFKLMKFLAPPTHGLRPIGEEN 366 Pyrococcus horikoshii...
O27088 283 ------------------------------ID----LNKRPKDMKWEEAEQIVE----AFKKMKFMSPPTSGLIPIGEEQ 324 Methanothermobacter t...
Q9YE64 306 ------------------------------------pDLKPRELLKKGRDKLLRrladALMEYPFRAPKSDYLSPIGSDI 349 Aeropyrum pernix K1
O29605 276 ------------------------------------gDETPQEMGRDDAAKLLN----AFRQTDFLPPPTDCLSPIGEAM 315 Archaeoglobus fulgidu...
Q58434 395 vknivknpeefiaeiknkglisdeelkkfeDEvksiLNKNPKELTWDEAEMIVN----CLQSMEFMAPPTTGLRPIGAEN 470 Methanocaldococcus ja...
O74020 367 IKRGLTGILKPEFVTAVTRSPKVYAGGIPFQVEVGLAYGGQISGS-------EILRYANRVPLLFDAGSCVITSAVRSID 439 Pyrococcus horikoshii...
O27088 325 IDKGMKEILQPEFTATVTRKPKTYRGGIAFIVEAGIAYGGNSGRLvgdqrkaEIMRFANRVPLTFDAGSCAITEGVKSLD 404 Methanothermobacter t...
Q9YE64 350 IEIGLRRMFNPEWVGAVSRSPKAYRG-HPFIVEVGIAYGGGIEARse----pLLLRYANKIPLLYEEREDVSYKVVSSIN 424 Aeropyrum pernix K1
O29605 316 IAKSLMAEFQPEFVYAVTRKPKVYSG-HPFLVEVGLAYGGEIKSek-----vTLLRYANKIPLLYQQGGCALTKAVESVN 389 Archaeoglobus fulgidu...
Q58434 471 IEKSLKELLQPDFVKAITRNPKTYKGGIPFAVEVAIAYGGNAGRQgdegrrmEIMRFANHVPLLYDASACGLTKAVKSIN 550 Methanocaldococcus ja...
O74020 440 WKRYK----IDSFDsAPLVVLVNVISVHVPYTSTGKQSIA----DIEEIYNEIRLALMDAARKLALYLGGKYRRMYQIKR 511 Pyrococcus horikoshii...
O27088 405 WKRYG----IRDLEnAPISIFVNVVSTNVPYLSTGKQSVS----PEPEILGEIRQATMIVARKLHKYLRKKKAAKEEAQR 476 Methanothermobacter t...
Q9YE64 425 WRQY-----NVDFP-APLVVLVHIASTKVPYKGVGKESVS----DVPEIEAEIRNAVQEVARRLRLYLSRKAREEEAIRR 494 Aeropyrum pernix K1
O29605 390 WKSYGmvqnRGELPsAPAVILIHLASTNIPYTSESKESVA----AIPEIIDETRLALQEVGRRLKEYLERKSRQQKKKKK 465 Archaeoglobus fulgidu...
Q58434 551 WKRYG----LRGED-APITVFVNLISTFIPYTSAGKQAVAcsenENEEIYNEIRHALMICGRELEKYLSRIRREAEEEKK 625 Methanocaldococcus ja...
O74020 512 RKTLEKYLPEIARSLHILTGEP 533 Pyrococcus horikoshii OT3
O27088 477 AKIFESYVPVIIKQAALLAERE 498 Methanothermobacter thermautotrophicus str. Delta H
Q9YE64 495 SVTLAKYIPEVAVSLAYFLRPP 516 Aeropyrum pernix K1
O29605 466 EEMIGKVLPLIAKKVCEILEKE 487 Archaeoglobus fulgidus DSM 4304
Q58434 626 RKYVMKYARIFAEALANILNKP 647 Methanocaldococcus jannaschii DSM 2661
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