Conserved Protein Domain Family
RPE1

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TIGR01045: RPE1 
Rickettsial palindromic element RPE1 domain
This model describes protein translations of the first family described, RPE1, of Rickettsia palindromic elements (RPE). In Rickettsia conorii, 19 copies are found within protein coding regions, where they encode an insert relative to homologs from other species but do not disrupt the reading frame. Insertion is always in the same reading frame. This model finds RPE-encoded regions in several Rickettsial species and, so far, no where else.
Statistics
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PSSM-Id: 273412
Aligned: 10 rows
Threshold Bit Score: 65.6752
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9ZE52       226 EVSSNLSYTEEFESNTAAlTTTACINKCPDVSVRLTPKLPLKGsytVR 273  Rickettsia prowazekii str. Madrid E
Q9ZD70       152 RYFSKPAYRNAFKANTIR-ATTAYKKVFNDPSLGSTYPLEVPL---GK 195  Rickettsia prowazekii str. Madrid E
CAB56073     439 RPLSKLAYREEFKGDTER-STAAYKSVREDASTGSTSKLPLEVe-fGK 484  Rickettsia helvetica
WP_010977289 262 RHLAKFAYREEFKGNTER-NTTAYTLVREDASTGLTYKLPLEVe-fGK 307  Rickettsia conorii
WP_010976875   8 RHLSKPAYREECTGDTER-STTAYMDILEDVSTGSTSKLPLEAk-fVK 53   Rickettsia conorii
WP_010977560  50 RHLSKLTYREELVGNMQH-STAAYALVREDASSRLTHKLPLEAe-fEK 95   Rickettsia conorii
WP_010977327 258 RHLSKLAYREVLEGNTEAlATAAYKSNRTDASTGLTYKLPLEVe-fGK 304  Rickettsia conorii
WP_010976853 236 RHLSKPVYREEFKRDTEH-STA---DIREDASTGSTSKLPLEVk-cGK 278  Rickettsia conorii
WP_016769798  41 DLLHNKTNKEEFEGDTER-RIAMYINVREDSSTGSTYKLPLEAsyprd 87   Rickettsia sibirica
WP_004597837 117 RYLSKQTDRNEFITTAES-----YIGISKHKSTNITYKLPLKEq-fCN 158  Rickettsia prowazekii
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