3J20,3J3A


Conserved Protein Domain Family
uS5_euk_arch

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TIGR01020: uS5_euk_arch 
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ribosomal protein uS5, eukaryotic/archaeal form
This model finds eukaryotic ribosomal protein uS5 (previously S2 in yeast and human) as well as archaeal ribosomal protein uS5. [Protein synthesis, Ribosomal proteins: synthesis and modification]
Statistics
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PSSM-Id: 273398
Aligned: 9 rows
Threshold Bit Score: 359.866
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3J20_F    12 VLDEWEPKTKLGMMVKEGQITDIHEIFRRGYQIKEPEIIDVLL-PEVnareN-QEVLDIALTVRMTDSGRRVRFRVLAAV 89  Pyrococcus furiosus...
O26131     6 NMEEWEPRTQLGRLVKEGVITSIDEIFEEGHPIMELEIIDALL-PDL----E-EEVIDVNLVQRMHKSGRKVNFRVIVAV 79  Methanothermobacter...
P54045     4 NIDEWEPKTTIGRMVKEGQITDIDYILDNNLPILEPEIVDALL-PDL----E-EKVLDVKLVQRMHKSGRRARFRATVVV 77  Methanocaldococcus ...
O28374     1 mTEDWVPKTKLGRLVADGKIKTMDEALASNLPLKEPEIVDILL-PDL----E-DDVLEISMVQRMTDSGRRTKFRVTAVV 74  Archaeoglobus fulgi...
Q9YF95    10 DLEAWQPRTRVGRLVKEGKIKSIDEIFRRNLPILETEIVDYLL-PGLd---H--EVIDVSIVQKMTDAGRITRFRAVVVV 83  Aeropyrum pernix K1
O74892    30 EEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLn---D--EVMKVVPVQKQTRAGQRTRFKAFVVI 103 Schizosaccharomyces...
AAC04624  22 EDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLgASLk---D--EVLKIMPVQKQTRAGQRTRFKAFVAI 96  Norway rat
O59439    12 VLDEWQPRTKLGMLVKEGQITDIHEIFRRGYQIKEPEIIDVLL-PEVna-rEnQEIIDIALTVRMTDSGRRVRFRVLAAV 89  Pyrococcus horikosh...
3J3A_C    56 EDKEWMPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFL-GASl---K-DEVLKIMPVQKQTRAGQRTRFKAFVAI 130 human
3J20_F    90 GNRDGYVGLGIGHGKEVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFAVEGKEGSVRVRLIPGPRGLGLVIGD 169 Pyrococcus furiosus...
O26131    80 GNKDGYVGLGQGKAREVGPAIRKAVDDAKFNIIKVRRGCGDWGCVCGREHTVPFKVSGKSGSVRVTLIPAPGGVGLAIGD 159 Methanothermobacter...
P54045    78 GNRNGYVGVGKGKAKEVGPAIRKAIAQAKKNIIRVKRGCGSWECGCGTPHSIPYKGYGKCGSTAIEILPAPKGVGLVAGD 157 Methanocaldococcus ...
O28374    75 GNRNGYVGIGTGKASQVAPAIQKAINNAKLNIFKVQRGCGSWECGCGGDHSLPFKVTGTSGSVRVTLIPGPKGLGIVAGD 154 Archaeoglobus fulgi...
Q9YF95    84 GNKDGYVGLGKGKARQFRFAIEKAIRNAKLNIIPVRRGCGSWECTCGEAHSVPFTVRGKSGSVEVILKPAPKGTGLVAGD 163 Aeropyrum pernix K1
O74892   104 GDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRR--GYWGTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAP 181 Schizosaccharomyces...
AAC04624  97 GDYNGHVGLGVECSKEVATAIRGAIILAKLSIVPVRR--GYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAP 174 Norway rat
O59439    90 GNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFAVEGKEGSVRVRLIPGPRGLGLVIGD 169 Pyrococcus horikosh...
3J3A_C   131 GDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRR--GYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAP 208 human
3J20_F   170 VGKKILRLAGVQDVWSQTFGETRTTVNFAKAVFNALYNTN-RVAISPEMIERYGI 223 Pyrococcus furiosus DSM 3638
O26131   160 VGKTIMRLAGIDDVWSHTRGQTQTTVNFARATFDALKQLS-KVKASEKDLKNLGV 213 Methanothermobacter thermautotrophicus str. ...
P54045   158 VAKAVLGLAGIKDVWTKTFGETRTTYNFAMATFEALKSLN-FTRTMEKHKEKLGI 211 Methanocaldococcus jannaschii DSM 2661
O28374   155 VAKRVIELAGVKDVWSFTKGQTKTTVNFAKATYEALKKTM-YVKR---------- 198 Archaeoglobus fulgidus DSM 4304
Q9YF95   164 VAKVVLRLAGISDVWTFTKGETRTSYNFARATYLALRNTYrFVTPADWAEARLRL 218 Aeropyrum pernix K1
O74892   182 VTKRFLQLAGIEDCYTQSRGSTKTLGNFVKAAFAAASLTYgILTPNLWAERPFGQ 236 Schizosaccharomyces pombe 972h-
AAC04624 175 VPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYsYLTPDLWKETVFTK 229 Norway rat
O59439   170 VGKKILRLAGIQDVWSQTFGETRTTVNFAKAVFNALYNTN-RVVVTPEMIERYGI 223 Pyrococcus horikoshii OT3
3J3A_C   209 VPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYsYLTPDLWKETVFTK 263 human
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