Conserved Protein Domain Family
yjdL_sub1_fam

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TIGR00924: yjdL_sub1_fam 
amino acid/peptide transporter (Peptide:H+ symporter), bacterial
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. [Transport and binding proteins, Amino acids, peptides and amines]
Statistics
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PSSM-Id: 273342
Aligned: 3 rows
Threshold Bit Score: 602.596
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
CAB89436      13 GtpgtektFFGHPRGLATLFMTEMWERFSYYGMRALLPLYLVAPg---gLGLGAGTATAIYSVYLSLVYLLTMPGGWFGD 89  Streptomyces co...
CAB76924       8 G-------LLQQPKPFFMIFFVELWERFGYYGVQGILAVFFVQQ-----LGFSQEQSFITFGAFSALVYGLISVGWYVGD 75  Aeromonas hydro...
WP_002223221   9 Gek----tFFGHPFQLSTLFHIELWERFSFYGMQGILLIYLYYTadkggLGIDKTLAGGIVGAYSGSVYLSTILGAWFAD 84  Neisseria menin...
CAB89436      90 RVWGPRKTVAIAGGVIMLGHLTLALPS--SGTFYAGLGLVAIGSGLLKANISTMVGQLYDGPDd-PRRDGGFTVFYMGIN 166 Streptomyces co...
CAB76924      76 HVLGTKRTMVLGAIVLVIGYFMTGMSIynPDLIFYALGTIAVGNCLFKANPASLLAKCYERGD--PRLDGAFTLFYMSIN 153 Aeromonas hydro...
WP_002223221  85 RVWGAEKTLFLSGIVVMLGHIVLAAAPg-LYGLLIGLIFIALGSGGVKSTASSMVGALYEQDEmrPLRDAGFSIFYIAIN 163 Neisseria menin...
CAB89436     167 LGAFAAPLTIGTIGENVNWHLGFALAAVGMGLGVLQFLIGSRHLApHSSAVPKPLSve-eKTSTLRKAAFWAALAVVFYA 245 Streptomyces co...
CAB76924     154 IGSLISLSLAPVIADHYGYTVTYNLCGVGLVIALLTFFACRHMVR-DIGSEPDHLP----LDYGKLLLVLLGSVALVFFC 228 Aeromonas hydro...
WP_002223221 164 IGGFLGPLLTGLLQENIGFHYGFGAAAVGMAFGLWRYSLGRKNLP--HPTVPHPLSkgqgKTAAAVGIALIAALATAIKT 241 Neisseria menin...
CAB89436     246 IVGFSGHYTLNwILVPLTLLGVIIPVLVLTNIkrdksLDRAEQSKMSAYIWFFVAAAVFWMIYDQGGSTLSLFADSSADN 325 Streptomyces co...
CAB76924     229 AWLMHHVVIAN-MVLMTVTLAVVIFFFREAFK-----LDAVARNKMYVAFVLMLEAVVFYVLYAQMPTSLNFFAINNMHH 302 Aeromonas hydro...
WP_002223221 242 GLVNLDNFSG--ILLSTVILAVIAYFARLLTNp---rVSSDNKRHIIAYIPLFLTICMFWAVWFQIYTVATVYFDETVNR 316 Neisseria menin...
CAB89436     326 SVFGWSFPVSWYQSVNPVIIMALAPVFATVWLALNRRGKEPSTVVKFCGGLVLVGASFFLFLAP-LGIAEGGHKAAAMWL 404 Streptomyces co...
CAB76924     303 EMLGMSVNPISFQALNPFWVVVGSPVLAMIYTRLGSKGRDLTMPLKFTLGMLFCSLGFLTAAASgIWFADAQGLTSPWFM 382 Aeromonas hydro...
WP_002223221 317 TIGSFTVPVAWKDSMQSLWVILFSGLMAAMWTKMGR--KQPKTPLKFAMAVFVTGASFLGFVP----FISSGTPMPIAVF 390 Neisseria menin...
CAB89436     405 VAIYFVQTCGELMLSPVGLSVTTkMAPVKYASQMMGVWFLAVTAGDATTGLLSIAGVDLN-KTG----------IVAAEA 473 Streptomyces co...
CAB76924     383 VLIYLFQSLGELMISALGLPWWR-IVPQRLMGFILGMWFLTQAMASLLGGYVATFTAVPQgVTDplqtlpiytdVFGKIG 461 Aeromonas hydro...
WP_002223221 391 ALIVLAITIGELMISPIALSISTkIAPPLFKTQMVALNFLAFSLGFTLGGVLFEKGYQAGdEIG----------FYRLLF 460 Neisseria menin...
CAB89436     474 TLAVVAGVAIWMYRKRVKELM 494 Streptomyces coelicolor A3(2)
CAB76924     462 LVTLLVAVVMALMVPWLNRMM 482 Aeromonas hydrophila
WP_002223221 461 YIGAATGFLLLLLVPKLNKML 481 Neisseria meningitidis
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