Conserved Protein Domain Family
gnd_rel

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TIGR00872: gnd_rel 
6-phosphogluconate dehydrogenase (decarboxylating)
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. [Energy metabolism, Pentose phosphate pathway]
Statistics
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PSSM-Id: 273313
Aligned: 3 rows
Threshold Bit Score: 500.528
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P54448         3 IGLIGLGKMGINIGKQFIDRNHQVVGYDVNQAAVDELK-AYGAEGTTNLKEFISLLHPPRILWVMVPHG-IVDAVLRDVS 80  Bacillus subtil...
WP_010880286   4 LFLIGLGRMGSALAYRLKNRGWEIYGYSRTQTTRERAK-KDLGIKVLNSYENLKNFPSPKTVWLMVPHT-AVDEVLQNLK 81  Aquifex aeolicus
WP_003405880   3 LGMIGLGRMGANIVRRLAKGGHDCVVYDHDPDAVKAMAgEDRTTGVASLRELSQRLSAPRVVWVMVPAGnITTAVIEELA 82  Mycobacterium t...
P54448        81 PLLSKGDMIIEAGNSHYKESIRRYNQMKEAGIHYLDAGTSGGMEGARHGACFMVGGDHEAWEIVEPLFR----------- 149 Bacillus subtil...
WP_010880286  82 PFLNKGDTVIDGGNSYYKDSQRRYRELKEVDVNFLDVGVSGGILGKDTGFSFMIGGDEEVFKKHEKLFK----------- 150 Aquifex aeolicus
WP_003405880  83 NTLEAGDIVIDGGNTYYRDDLRHEKLLFKKGIHLLDCGTSGGVWGRERGYCLMIGGDGDAFARAEPIFAtvapgvaaapr 162 Mycobacterium t...
P54448       150 ------DTAVEN-GYLYAGEAGSGHFLKMIHNGIEYGMMAAIGEGFEVLENS----------------------QFDFDY 200 Bacillus subtil...
WP_010880286 151 ------DLAYEEkGYAYLGSSGAGHFAKMVHNGIEYGIMEAIAEGFELLKKS----------------------PFDYDL 202 Aquifex aeolicus
WP_003405880 163 tpgrdgEVAPSEqGYLHCGPCGSGHFVKMVHNGIEYGMMASLAEGLNILRNAdvgtrvqhgdaetaplpnpecyQYDFDI 242 Mycobacterium t...
P54448       201 EKVARVWNHGSVIRSWLMGLTERAFAKDAKLDQIKGIMHSSGEGKWTVETALDLQTATPVIAMSLMMRYRSLTDDTFTGK 280 Bacillus subtil...
WP_010880286 203 REVARVYSQGSVIRSFLIDLLVKAFEDFGDLEDVEGYVEDSGEGRWCVKESVELGAPIPVIAQSFYERFSSREKDLFKNK 282 Aquifex aeolicus
WP_003405880 243 PEVAEVWRRGSVIGSWLLDLTAIALRESPDLAEFSGRVSDSGEGRWTAIAAIDEGVPAPVLTTALQSRFASRDLDDFANK 322 Mycobacterium t...
P54448       281 VVAALRNEFGGHATEKK 297 Bacillus subtilis subsp. subtilis str. 168
WP_010880286 283 VLAVLRYEFGRHRVKKK 299 Aquifex aeolicus
WP_003405880 323 ALSAMRKQFGGHAEKPA 339 Mycobacterium tuberculosis complex
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