Conserved Protein Domain Family
yihY_not_rbn

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TIGR00765: yihY_not_rbn 
YihY family inner membrane protein
Initial identification of members of this protein family was based on characterization of the yihY gene product as ribonuclease BN in Escherichia coli. This identification has been withdrawn, as the group now finds the homolog in E. coli of RNase Z is the true ribonuclease BN rather than a strict functional equivalent of RNase Z. Members of this subfamily include the largely uncharacterized BrkB (Bordetella resist killing by serum B) from Bordetella pertussis. Some members have an additional C-terminal domain. Paralogs from E. coli (yhjD) and Mycobactrium tuberculosis (Rv3335c) are part of a smaller, related subfamily that form their own cluster. [Unknown function, General]
Statistics
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PSSM-Id: 273260
Aligned: 6 rows
Threshold Bit Score: 256.525
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P44608         6 NFGLLFWKRFS-ENKLNQVAGALTYSTMLAMVPLVMVIFSIFSAFPVFNEVTGELKEMIFTNFAPSASDMVGEYIDQFVS 84  Haemophilus inf...
P32146        18 AWLKLLWQRID-EDNMTTLAGNLAYVSLLSLVPLVAVVFALFAAFPMFSDVSIQLRHFIFANFLPATGDVIQRYIEQFVA 96  Escherichia coli
tigr:NMB0524  17 AFAWFVVRRFD-EERVPQAAASMTFTTLLALVPVLTVMVAVASIFPVFDRWSDSFVSFVNQTIVPQGADMVFDYINAFRE 95  Neisseria menin...
WP_003233663   2 SFLKELFSRYT-LHEGQSKSAELAYFFLLSLFPFLIFMLTLTAYLPLSTDDVLGVIEQYAPASAMSLVESIT--HQTLNN 78  Bacillus subtilis
WP_010932994  21 AFFSFMWRHFV-HDRVLMSAGSLAFQTLLSLVPLMAVTLSILKVFPVFASLKQYIGDFLFQNFAPAQGSILKGYLWEFID 99  Chlorobaculum t...
WP_001208606  18 IFPKRLKNAFLgLSELFYYASSLSFYTILSLSPILLFVFSLFVS-HYLQAHSGEMEALIFPN-APKLIGAIKDFLENFKK 95  Helicobacter py...
P44608        85 NSKKMSAVGIVSLIAVALMLINNIDRTLNSIWHNSQSRSPLSS--FAIYWMILTLGPLIIGVSIGISS-YI-----KIMF 156 Haemophilus inf...
P32146        97 NSNKMTAVGACGLIVTALLLMYSIDSALNTIWRSKRARPKIYS--FAVYWMILTLGPLLAGASLAISS-YL-----LSLR 168 Escherichia coli
tigr:NMB0524  96 QANRLTAIGSVMLVVTSLMLIRTIDNTFNRIWRVNSQRPWMMQ--FLVYWALLTFGPLSLGVGISFMVgSV-----QDAA 168 Neisseria menin...
WP_003233663  79 RNGGLLSFGIIAALWSASNGMNAIVRSLNHAYDVEENRSFIIVrlTSIFLTIAMVFTILVALLLPVFGrEIgrlasDFVG 158 Bacillus subtilis
WP_010932994 100 KTSSLSTVGGLFLIVIVLFLISTIDQTLNDIWEVQTPRRRLQG--FTLYWTVLTLGPVFIGTSVLASSyVW-----YSVF 172 Chlorobaculum t...
WP_001208606  96 TDMTLGTLEEVSIVVALVLFCENYRSIASKIFQAKPRDYAHFK--GKEIFLFWGFG-TTLVFLFALPLvVF-----FDIK 167 Helicobacter py...
P44608       157 EQSEHLSLGLKLLSFVPFLFTWFIFTLIYTVVPNKKVKI-KHSAYGAFLAAIFFTLGKQAFTWYIVTFPSYQLIYGAMAT 235 Haemophilus inf...
P32146       169 WASDLNTVIDNVLRIFPLLLSWISFWLLYSIVPTIRVPN-RDAIVGAFVAALLFEAGKKGFALYITMFPSYQLIYGVLAV 247 Escherichia coli
tigr:NMB0524 169 LASGAPQWSGALRTAATLTFMTLLLWGLYRFVPNRFVPA-RQAFVGALATAFCLETARSLFTWYMGNFDGYRSIYGAFAA 247 Neisseria menin...
WP_003233663 159 ASDLFLSVWAAIRWGVSPLVLLIVFSALYVIAPNKKLSL-RFVMPGAVFATIGWIIVSTLFSFYVSTFANYSATYGSIGG 237 Bacillus subtilis
WP_010932994 173 AEGALLEMKARVLSYVPVLNSVIAFFLLYMLVPNRKVRF-THALAGGVLAAVLFELAKRWFTFYVSSFATFEHIYGALSV 251 Chlorobaculum t...
WP_001208606 168 IQVFFEDKNSNLLHVLRWIGTYAFFLILFTIPTNKVFKHyFWVFLWVFFTSVSWHVLKWAFTYYVLYNRTYHELYGSVSI 247 Helicobacter py...
P44608       236 LPIMLLWIQISWLVVLVGAQLASTLDEI 263 Haemophilus influenzae Rd KW20
P32146       248 IPILFVWVYWTWCIVLLGAEITVTLGEY 275 Escherichia coli
tigr:NMB0524 248 VPFFLLWLNLLWTLVLGGAVLTSSLSYW 275 Neisseria meningitidis MC58
WP_003233663 238 IIVLMIWFYLSGILIILGGEINALLHKR 265 Bacillus subtilis
WP_010932994 252 VPMLFFWIYLEWVVVLTGAEFVFSLGYF 279 Chlorobaculum tepidum
WP_001208606 248 LWFLMSWVYVSWLVILIGMYGCKVCDAF 275 Helicobacter pylori
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