Conserved Protein Domain Family
PPR
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TIGR00756: PPR 
pentatricopeptide repeat domain (PPR motif)
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Links
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Statistics
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PSSM-Id: 273253
Aligned: 248 rows
Threshold Bit Score: 28.5751
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
AAT78758      596 IAYTCLLNGLVNEGQVKAASYMF-QEIiCKEGLYADC 631  Japanese rice
AAF26996      518 QLLNTYMDCMFKAGEPEKGRAMF-EEI-KARRFVPDA 552  thale cress
AAT78758      632 IAYNSMMNGYLKGGQINEIERLM-RNM-HENEVYPSS 666  Japanese rice
BAB93270      248 FTFNSVVDVLVKGGRMEEALHIK-DEL-LATGKKMSV 282  Japanese rice
BAA94973      356 STFNAAMSCLLKGHDLVETCRIF-DGF-VSRGVKPGF 390  thale cress
AAF23295      237 AAFNAVLNACANLGDTDKYWKLF-EEM-SEWDCEPDV 271  thale cress
AAQ15775      747 VTYHQMMNTYAKTGDIVKMEKLH-AEY-VEKGHNNNA 781  Trypanosoma brucei brucei TREU927
AAC24372      205 LPFNVMMTLYMNLREYDKVDAMV-FEM-KQKDIRLDI 239  thale cress
NP_177512     760 TSFNQVMACYAADGQLSECCELF-HEMlVERKLLLDW 795  thale cress
XP_002869309  858 ITHNIVISGLVKAGNVDDALDLYyDLM-SDRDFSPTA 893  Arabidopsis lyrata subsp. lyrata
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