1RCU


Conserved Protein Domain Family
TIGR00725

?
TIGR00725: TIGR00725 
Click on image for an interactive view with Cn3D
TIGR00725 family protein
This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE. [Hypothetical proteins, Conserved]
Statistics
?
PSSM-Id: 129808
View PSSM: TIGR00725
Aligned: 6 rows
Threshold Bit Score: 181.201
Threshold Setting Gi: 499186815
Created: 8-Oct-2014
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
1RCU_A        26 VVVVGYSGPVNKSPvsELRDICLELGRTLAKKG---YLVFNGGRDGVXELVSQGVREAGGTVVGILPDEE--AGNPYLSV 100 Thermotoga mari...
WP_004080450   4 VVVVGYSGPVNKSPvsELRDICLELGRTLAKKG---YLVFNGGRDGVMELVSQGVREAGGTVVGILPDEE--AGNPYLSV 78  Thermotoga
WP_010878622   3 LMQIGVIGAGECDE--ETYRIAYRVGELIAEKG---HVLINGGLGGVMEASAKGAKSKGGLVVAILPRKKd-LCNDFADI 76  Archaeoglobus f...
WP_010880029   1 MRQVSVIGSSKASE--EEYEFAYRLGKELAKRN---LVVVCGGRTGVMEAVCKGAKEEGGLTIGIMPSYDghEANPYVDI 75  Aquifex aeolicus
WP_010884355   1 MIQIAIAGSS--DE--KPLEVAVRKTKEFIKALpsdVILMTGGRGGIMEVASEEFRKKGGIVVGILPYSD--NGNRFNTV 74  Pyrococcus hori...
WP_003900858  26 PYQIGVFGSGTIGP--RVYELAYQVGAEIAKQG---HILISGGMTGTMEASSRGASDADGLVVGVLPGDKftDGNAYSTI 100 Mycobacterium t...
1RCU_A       101 AVKTGLDFQxRSFVLLRNADVVVSIGGEIGTAIEILGAYALGKPVILLRG----TGGWTDRISQVLIDGKYLDN------ 170 Thermotoga mari...
WP_004080450  79 AVKTGLDFQmRSFVLLRNADVVVSIGGEIGTAIEILGAYALGKPVILLRG----TGGWTDRISQVLIDGKYLDN------ 148 Thermotoga
WP_010878622  77 RIATDMGHA-RNVIIVHSSDALISVGGGYGTISEIAIALK-EGKRVASLK----PP--------VVIEGMRVFE------ 136 Archaeoglobus f...
WP_010880029  76 KVNTGMNWN-RNPIVVASSEMVLAVGGNYGTLSEIAYALIL-GKYVVGYK----T---------HKVEGVEQVE------ 134 Aquifex aeolicus
WP_010884355  75 RVKTGLNPVeRSGVLIESADVLVVLGGGVGTMIEALMAYNLGIPVIVITG----TGYASDRLMELAKEGYFDHK------ 144 Pyrococcus hori...
WP_003900858 101 KILSGMQFA-RNYITGLSCHGAIVVGGSSGAYEEARRVWEGRGPVVVLANsgspTGASAQMLSMQEIFGVAFPEdkpkpw 179 Mycobacterium t...
1RCU_A       171 R---RIVEIHQAWTVEEAV 186 Thermotoga maritima
WP_004080450 149 R---RIVEIHQAWTVEEAV 164 Thermotoga
WP_010878622 137 ---------TPEEAVNYCI 146 Archaeoglobus fulgidus
WP_010880029 135 ---------SLEEMLKKVD 144 Aquifex aeolicus
WP_010884355 145 RivkVIFTDDPKEAAKLAL 163 Pyrococcus horikoshii
WP_003900858 180 R---VFSAATPAESVSLVI 195 Mycobacterium tuberculosis complex
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap