Conserved Protein Domain Family
ttdA_fumA_fumB

?
TIGR00722: ttdA_fumA_fumB 
hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase (see PROSITE:PDOC00147). This model represents a subset of closely related proteins or modules, including the E. coli tartrate dehydratase alpha chain and the N-terminal region of the class I fumarase (where the C-terminal region is homologous to the tartrate dehydratase beta chain). The activity of archaeal proteins in this subfamily has not been established.
Statistics
?
PSSM-Id: 273234
Aligned: 6 rows
Threshold Bit Score: 423.026
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q58690         3 ISDVVVELFREAAIYLPEDVKNALEEAYKKESSEISKNTLKAIIENNKIAEETQVPLCQDTGVPIVFLKIG-KniNSSEI 81  Methanocaldococ...
WP_010881157   9 IKEAVKEAIIEANCVLPREVRVAFQEALKREESPIGREVLTQILENAEIAQKEKMPYCQDTGVDVIFVFLGqD--VHVVG 86  Aquifex aeolicus
KDY71719      14 LTEIVANFTAMISTRMPDDVVDKLKQLKDAETSSMGKIIYHTMFDNMQKAIDLNRPACQDTGEIMFFVKVG-S--RFPLL 90  Escherichia col...
WP_010877341   7 VEETVCRLFREAVIRIPPDVTFAIKKAYLQEEDEIALLNLKAILDNIELAEKMEVPVCQDTGLPIVFVRMG-----KVEV 81  Methanothermoba...
WP_010885748   1 MREYIKEGIKLAVTNIPEDVVSAIREALEREESKIAKYNLEMILKAIDISRKEGIPVCQDTGTPIFFVRTN------GPI 74  Pyrococcus hori...
WP_010878595   6 VVEAVISALKKAHTELPEDVVTAIKKAYDSEENDIAKRNLEAILKNIEAAKKLGVPMCQDTGIPVFFVEVG-R--ELCLD 82  Archaeoglobus f...
Q58690        82 MKIIEEIKEGVKKATEEVPLRPNVVHP--LTRENFKTNVglnSPFINIEFDEslDREIEIIAFPKGAGSENMSALKMLKP 159 Methanocaldococ...
WP_010881157  87 GSLEDAINQGVREATEEGYLRASMVWDpvFERKNTKDNT---PAIIHYEVVP--GDRVKIVVAPKGAGSENTSRLAMLKP 161 Aquifex aeolicus
KDY71719      91 GELQSILKQAVEEATVKAPLRHNAVEI--FDEVNTGKNTgsgVPWVTWDIIPd-NDDAEIEVYMAGGGCTLPGRSKVLMP 167 Escherichia col...
WP_010877341  82 EDLYEGIAAGVERATAEVPLRPNVVDP--LTRENTGTNTgqmIPQIDVEITD--TDNLEITVFPKGFGSENNNALLMGLP 157 Methanothermoba...
WP_010885748  75 NKIYDEIVKGVEIATREVPLRPNALHV--LDGKVIGn-----VPEVHFE--P--GKETLISILMKGGGSENCTALFPLTP 143 Pyrococcus hori...
WP_010878595  83 FDLKEAIVEGVRKATAEIPLRPNAVHP--ITRENSGDNTglgIPQINVELVK--GDELRMVVMPKGAGSENVSALKMMLP 158 Archaeoglobus f...
Q58690       160 SDGIEGIKNFVLETIANAGGKPCPPIVVGIGIGGTADVALKLAKKALLRKIGERHRDKEIANLEKELLEKINSLGIGAMG 239 Methanocaldococ...
WP_010881157 162 ADGWEGVKKFILETVKFAGPNACPPFTVGVGIGGNFEYCAYLAKKALLRPVGKRHENPLIAKVEEELLEEINKIGWGPMG 241 Aquifex aeolicus
KDY71719     168 SEGYEGVVKFVFENISTLAVNACPPVLVGVGIATSVETAAVLSRKAILRPIGSRHPNPKAAELELRLEEGLNRLGIGPQG 247 Escherichia col...
WP_010877341 158 GDGIEGIKDFVVRTVLEAGGKPCPPVIVGVGIGGSSDLAMKLAKKALLERVGDRNPDKKLASLEEDILNSINESGSGPMG 237 Methanothermoba...
WP_010885748 144 AEGLEGVKNKVIEHVQSCGGKPCPPIIVGIGIASPAEKAIILAKKALLRRISERHPNEKLAKFERELLEEINSLGIGPMG 223 Pyrococcus hori...
WP_010878595 159 -TQVDKIKDFVVETVKNAGGKPCPPIFVGVGVGSTFDGAAKLAKKALLRNVLEMN------DFELELLEAVNELGIGAMG 231 Archaeoglobus f...
Q58690       240 LGGDITALDVFIEIAGCHTASLPVGICIQCWADRRAIKRI 279 Methanocaldococcus jannaschii DSM 2661
WP_010881157 242 FGGTVTAVDVKVEMYPCHIASLPVAVNIQCHANRHAERVV 281 Aquifex aeolicus
KDY71719     248 LTGNSSVMGVHIESAARHPSTIGVAVSTGCWAHRRGTLLV 287 Escherichia coli 2-460-02_S4_C2
WP_010877341 238 MGGKTTALDVKIKTAHTHTAGLPVGVCIQCWAARRATAIL 277 Methanothermobacter thermautotrophicus
WP_010885748 224 LGGRTTALDVKVEVETRHPASYIVGVVIQCWAHRRAFIKV 263 Pyrococcus horikoshii
WP_010878595 232 LGGKYTALAVLVEFGHCHTASLPVAVNIQCWANRRAEVVL 271 Archaeoglobus fulgidus
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap