Conserved Protein Domain Family
spoT_relA

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TIGR00691: spoT_relA 
(p)ppGpp synthetase, RelA/SpoT family
The functions of E. coli RelA and SpoT differ somewhat. RelA (EC 2.7.6.5) produces pppGpp (or ppGpp) from ATP and GTP (or GDP). SpoT (EC 3.1.7.2) degrades ppGpp, but may also act as a secondary ppGpp synthetase. The two proteins are strongly similar. In many species, a single homolog to SpoT and RelA appears reponsible for both ppGpp synthesis and ppGpp degradation. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. [Cellular processes, Adaptations to atypical conditions]
Statistics
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PSSM-Id: 213552
Aligned: 9 rows
Threshold Bit Score: 826.644
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P74007        57 AFCFAYDLHAQQRRKSGEPYIAHPVAVAGLLRDLGGDEAMIAAGFLHDVVEDTDISIEQIEALFGEETASLVEGVTKLSK 136 Synechocystis s...
Q50638        86 AYEVADQRHASQLRQSGDPYITHPLAVANILAELGMDTTTLVAALLHDTVEDTGYTLEALTEEFGEEVGHLVDGVTKLDR 165 Mycobacterium t...
O67012        30 AYEFAKEKHGEQKRKTGEPYIIHPLNVALKLAELGMDHETIIAALLHDTLEDTDTTYEEIKERFGERVAKLVEGVTKIGK 109 Aquifex aeolicu...
P17580        26 AYLVARDAHEGQTRSSGEPYITHPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSKLDK 105 Escherichia coli
P43811         1 --MIARDAHEGQFRSSGEPYITHPVAVASIIAQLHLDHEAVMAALLHDVIEDTPYTEEQLKEEFGASVAEIVDGVSKLDK 78  Haemophilus inf...
O51216        43 ALEIAEQLHYGQYRESGEPYIIHPIMVSLFLAKFQLDFKATIAGLLHDVLEDTNVEKEEIVKEFDEEILSLIDGVTKIHD 122 Borrelia burgdo...
P47520        30 AFYHAKTWHENQKRLSGEPFFIHPLRTALSLVEWNMDPITICAGLLHDIIEDTDQTEANIAMIFSKEIAELVTKVTKITN 109 Mycoplasma geni...
P75386        43 ALDYSKKWHGEQKRLSGEPFFIHPLRTALRLVEWNMDSNTVCAGLLHDIIEDTQVTEADLTAIFGKEITDLVVKVTKITS 122 Mycoplasma pneu...
WP_001002218  45 ALNLAAKSHKGQYRKSGEPYIVHPICVASLVAFCGGDEAMVCAALLHDVVEDTPCKIETIEQEFGQDVANLVDALTKITE 124 Helicobacter py...
P74007       137 FNFSSTTE--------HqaENFRRMFLAMAKDIRVIVVKLADRLHNMRTLDALSPEKQRRIARETKDIFAPLANRLGIWR 208 Synechocystis s...
Q50638       166 VVLGSAAE--------G--ETIRKMITAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMAS 235 Mycobacterium t...
O67012       110 IKYKSEQA-----------ENYRKLILATAEDPRVILLKLSDRLDNVKTLWVFREEKRKKIAKETMEIYAPLAHRLGVWS 178 Aquifex aeolicu...
P17580       106 LKFRDKKE--------AqaENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHH 177 Escherichia coli
P43811        79 LKFRTRQE--------AqvENFRKMILAMTRDIRVVLIKLADRTHNMRTLGSLRPDKRRRIAKETLEIYCPLAHRLGIEH 150 Haemophilus inf...
O51216       123 LHNKTRSI--------KeaNTISKMFFAMTHDIRIIIIKLADKLHNMTTLSYLPKNRQDRIAKDCLSTYVPIAERLGISS 194 Borrelia burgdo...
P47520       110 ESKKQRHLknk--kenLnlKSFVNIAINSQQEINVMVLKLADRLDNIASIEFLPIEKQKVIAKETLELYAKIAGRIGMYP 187 Mycoplasma geni...
P75386       123 ESKKQRQLnrk--kedLnlKSLVNIAMSSQQEVNALVLKLADRLDNISSIEFLAVEKQKIIAKETLELYAKIAGRIGMYP 200 Mycoplasma pneu...
WP_001002218 125 IRKEELGVssqdprmvVsaLTFRKILISAIQDPRALVVKISDRLHNMLTLDALPHDKQVRISKETLAVYAPIASRLGMSS 204 Helicobacter py...
P74007       209 FKWELEDLSFKYLEPDSYRKIQSLVVEKRGDRESRLETVKD-MLRFRLRDEGIEh--FELQGRPKHLYGIYYKMTSQDKA 285 Synechocystis s...
Q50638       236 VKWELEDLSFAILHPKKYEEIVRLVAGRAPSRDTYLAKVRA-EIVNTLTASKIK---ATVEGRPKHYWSIYQKMIVKGRD 311 Mycobacterium t...
O67012       179 IKNELEDWAFKYLYPEEYEKVRNFVKESRKNLEEYLRKYVIpKVRKELEKYGIE---AEIKYRSKHYYSIWEKTRRKGIR 255 Aquifex aeolicu...
P17580       178 IKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILS-EIEGRLQEAGIP---CRVSGREKHLYSIYCKMVLKEQR 253 Escherichia coli
P43811       151 IKNELEDLSFQAMHPHRYEVLKKLVDVARSNRQDLIERISQ-EIKVRLENSGIF---ARVWGREKHLYKIYQKMRIKDQE 226 Haemophilus inf...
O51216       195 LKTYLEDLSFKHLYPKDYKEIKNFLSETKIEREKKLYKGKL-SIEKELQKSGIE---AEITVRSKHFYSIFRKMQTRTNK 270 Borrelia burgdo...
P47520       188 VKTKLADLSFKVLDLKNYDNTLSKINKQKVFYDNEWDNFKQ-QLKKILAQNQIE---YQLESRIKGIYSTYKKLTVHEQN 263 Mycoplasma geni...
P75386       201 VKTQLADLSFKVLDPKNFNNTLSKINQQKVFYDNEWGNFKK-QLEEMLEQNQIE---YRLESRIKGIYSTYQKLTFHEQN 276 Mycoplasma pneu...
WP_001002218 205 IKNELEDKSFYYIYPEEYKNIKEYLHKNKQSLLLKLNAFAS-KLEKKLFDSGFShsdFKLVTRVKRPYSIYLKMQRKGAV 283 Helicobacter py...
P74007       286 -FEEIYDIAALRIIVESKGECYRALSVVHDVFKPIPGRFKDYIGLPKPNRYQSLHTTVLGl-TSRPLEIQIRTEEMHHVA 363 Synechocystis s...
Q50638       312 -FDDIHDLVGVRILCDEIRDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGp-EGKPLEVQIRTRDMHRTA 389 Mycobacterium t...
O67012       256 -LEDVHDILGVRIIVNTVPECYTVLGIIHSLFRPVPGKFKDYISLPKPNLYQSLHTTVIAd-KGKLVEFQIRTWEMHERA 333 Aquifex aeolicu...
P17580       254 -FHSIMDIYAFRVIVNDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGp-HGVPVEVQIRTEDMDQMA 331 Escherichia coli
P43811       227 -FHSIMDIYAFRVIVKNVDDCYRVLGQMHNLYKPRPGRVKDYIAVPKANGYQSLQTSMIGp-KGVPVEVHIHTEDMEQVA 304 Haemophilus inf...
O51216       271 -LTQIFDTLGIRIICKKQKECYEILEIVHRVWKPIPGRLKDYIASPKENKYQSLHTTVRIpeDNQLIEIQIRTEEMDRIA 349 Borrelia burgdo...
P47520       264 -ISKIHDLFAIRLITKSELDCYHILGLIHLNFLIDSKYFKDYIASPKQNLYQSIHTTVRl--KGLNVEIQIRTQQMDNVS 340 Mycoplasma geni...
P75386       277 -IAKIHDLFAIRLIVKSELDCYHLLGLIHLNFTVLMKHFKDYIASPKQNFYQSIHTTVRl--KGLNVEIQIRTQRMDHVS 353 Mycoplasma pneu...
WP_001002218 284 nIDEILDLLAIRILLKNPIDCYKVLGIIHLNFKPIVSRFKDYIALPKENGYKTIHTTIFD--ESSVYEVQIRTFDMHMGA 361 Helicobacter py...
P74007       364 EYGIAAHWKYKESgg---seNATLTSTDEKFTWLRQLLDWQSDLKDAQEY-VENLKQNLFDDDVYVFTPKGEVISLARGA 439 Synechocystis s...
Q50638       390 EYGIAAHWRYKEAkgrngvlHPHAAAEIDDMAWMRQLLDWQREAADPGEF-LESLRYDLAVQEIFVFTPKGDVITLPTGS 468 Mycobacterium t...
O67012       334 EKGIASHWAYKEgk------nP---SDAGVYSWLRELVESIQGSTNPSEV-LENLKSNLFFEEVFVFTPKGDLVVLPKGS 403 Aquifex aeolicu...
P17580       332 EMGVAAHWAYKEh------gETSTTAQIRAQRWMQSLLELQQSAGSSFEF-IESVKSDLFPDEIYVFTPEGRIVELPAGA 404 Escherichia coli
P43811       305 EMGITAHWVYKEng-----kNDSTTAQIRVQRWLQSLVEIQQSVGNSFEF-IENVKSEFFPKEIYVFTPKGRIVELPMGA 378 Haemophilus inf...
O51216       350 NYGVAAHWIYKE----------QIELKADDLSFINRIKKWQQESANKSQYsMNDIHKELLNTFIYVYTPEGEVVELPFGS 419 Borrelia burgdo...
P47520       341 KFGLASHWIYKE----------QKEGLLAPALQLNYLVTKQKHSHDFLKR-IFGTDIIKINVSASHEPNVIKQINVDSNN 409 Mycoplasma geni...
P75386       354 KYGFASHWIYKE----------KKEGLLASALQVNYLNSKQMHSRDFFKR-IFGTDIIKVNVSSDNEPNIVKKLNVESNS 422 Mycoplasma pneu...
WP_001002218 362 EYGNSAHWKYKAG-------GVDHEDHHEGMRWLQNFKYHDSDLKNDPKEfYELAKNDLYREDIVVFSPHGDTYTLPVGA 434 Helicobacter py...
P74007       440 TPVDFAYRIHTEVGHHMKGARVNGQWLG-VDTRLKNGDIVEIVTQKNSH--PSLDWLNFVVTPSARHRIRQWFKRSRRDE 516 Synechocystis s...
Q50638       469 TPVDFAYAVHTEVGHRCIGARVNGRLVA-LERKLENGEVVEVFTSKAPNagPSRDWQQFVVSPRAKTKIRQWFAKERREE 547 Mycobacterium t...
O67012       404 TPVDLAYKIHTEVGNHCAGAKSNGRIVP-LNYELKSGDVVEIITNPNKS--PSYEWLSFVKTSRARNKIKQFLKKQERER 480 Aquifex aeolicu...
P17580       405 TPVDFAYAVHTDIGHACVGARVDRQPYP-LSQPLTSGQTVEIITAPGAR--PNAAWLNFVVSSKARAKIRQLLKNLKRDD 481 Escherichia coli
P43811       379 TAVDFAYAVHSDVGNTCVGVTVEHKPYP-LSKALESGQTVNIITDPNAH--PEVAWLNFVVTARAKTRIRHYLKQRCEED 455 Haemophilus inf...
O51216       420 NSIDFAYIIHTDIGDQALYAKINGKISS-ITKPLKNEQIVEIFTSKDSK--PDVIWLNSVRTKKARSKIRSWLNK--NDN 494 Borrelia burgdo...
P47520       410 KLLDIAFENYPKQFAKLTKIEIDGVEINsFDTSVENEMLIEFYFGKNNN--LKSKWIRYMNNPIYREKVKKSLAKLAKSG 487 Mycoplasma geni...
P75386       423 KLLDIAYELYPKQFNKLEKIKLDGVEVMsFDVTAENEMVIEFCFGKTNN--LKRRWLRYMNNHVFRERVKKDLNKLKKAV 500 Mycoplasma pneu...
WP_001002218 435 IALDFAYMVHSDLGDKATDAYINSKKAL-LNQELRSGDVVKIIKGDKII--PRFIWMDQLKTSKAKNHLRIQRRNRLKEV 511 Helicobacter py...
P74007       517 NILRGRELLEKELG--KTGLEALLKSepMQKTAERC-----------NYQNVEDLLAGLGYGEITSNSVVNRLRENNVNn 583 Synechocystis s...
Q50638       548 ALETGKDAMAREVRrgGLPLQRLVNGesMAAVAREL-----------HYADVSALYTAIGEGHVSAKHVVQRLLAELGGi 616 Mycobacterium t...
O67012       481 YLSEGKRILERIREklGLSHEDLIN-----KIRERV-----------RFDTEEELLLALGKRKISSANLIKLIFPKKKE- 543 Aquifex aeolicu...
P17580       482 SVSLGRRLLNHALGgsRKLNEIPQEN--IQRELDRM-----------KLATLDDLLAEIGLGNAMSVVVAKNLQHG---- 544 Escherichia coli
P43811       456 AVKLGEVELNVALQphN-LGDFSIQQ--IRTVLDAL-----------ALSSLDELLREIGLGNQSASMIAHQFVGVPLE- 520 Haemophilus inf...
O51216       495 TIFVDNNIIAYLVG--A--NKE--Q-----------------------R-KLFSLFKSYTKTKIK--------------- 529 Borrelia burgdo...
P47520       488 RYSELA-FYEKELGekQLKLASETE---IQKRLNTL-----------RIKKMSDYLALIECTNFTNDEHLLFLAKNNDK- 551 Mycoplasma geni...
P75386       501 KYSELP-LYEKALEelHLKLADETQ---IKQRLNAL-----------GIKKLTEFLELIEYPHFPKNEHLYFLASNNQK- 564 Mycoplasma pneu...
WP_001002218 512 DTKSMINILATFFGrsVFEDMDLKDYknFEERLTDCgvettlteamkSFENLAKLTEEIENKVFSLKEDAILEYQEMSLw 591 Helicobacter py...
P74007       584 v-knSQSSQEVTLASSPqvh-pptPPATGKDN-SPIAGIEGLLYHIAGCCHPLP--GEPIMGVVTRGa-RGISIHRQGCH 657 Synechocystis s...
Q50638       617 ----DQAEEELAERSTPatm-prrPRSTDDVG-VSVPGAPGVLTKLAKCCTPVP--GDVIMGFVTRG--GGVSVHRTDCT 686 Mycobacterium t...
O67012       544 -----EKEE----R--------------RGSStVFLEDLSNIKHEVAKCCKPIP--GDEILGVITRT--KGLVLHEKSCS 596 Aquifex aeolicu...
P17580       545 -----DASIPPATQ---------------SHGhLPIKGADGVLITFAKCCRPIP--GDPIIAHVSPG--KGLVIHHESCR 600 Escherichia coli
P43811       521 -----SANTKNLEF---------------ESKiLTIAPMQVGKTQFAQCCHPIL--GDPIVGCCTEK--NTVVVHHQHCA 576 Haemophilus inf...
O51216       530 -----------------------------R--------IA-----IDPECSPTT--GEDIIGIIHKD---EIIVHNENCQ 562 Borrelia burgdo...
P47520       552 ----WNKLTKPLKFAFS-------KVVFHNSYfEQIEGIFITKIVIEPCCSKIPdmPEQVTGILTKN---ILSVHRYGCK 617 Mycoplasma geni...
P75386       565 ----WRELIKPIKFALS-------QAVFQNSYfEQIEGIYITKIVIETCCTKIPdmPEQVIGILMKN---ILRVHLHDCR 630 Mycoplasma pneu...
WP_001002218 592 trglRYLGFKTNVLNFLapnrqwqCKELEHFSvCSSNALEIKQVLLNDCCYPKY--GDEIIAIVTDLkdPKAIAHHKFCK 669 Helicobacter py...
P74007       658 NLEQMDG---DRLIPVRWNPnt--nnHQTYPVDIVIEAIDRVGVLKDILSRLSDNHINVRNADVKTH-LGRPAIISLKID 731 Synechocystis s...
Q50638       687 NAASLQQq-aERIIEVLWAPs----pSSVFLVAIQVEALDRHRLLSDVTRALADEKVNILSASVTTS-GDRVAISRFTFE 760 Mycobacterium t...
O67012       597 NLKNVLRlnpEKVKEVQLQAs-----G-YFQTDIRVVASDRIGLLSDITKVISESGSNIVSSMTNTR--EGKAVMDFTVE 668 Aquifex aeolicu...
P17580       601 NIRGYQKep-eKFMAVEWDke----tAQEFITEIKVEMFNHQGALANLTAAINTTTSNIQSLNTEEK-DGRVYSAFIRLT 674 Escherichia coli
P43811       577 SLKNACRq-----sLAKWDNvq---sAVNFEAELQIEILNEQNALLSLMTAISASESSLQNIWTEEL-ENNLLLVILQVC 647 Haemophilus inf...
O51216       563 KLKSYKKp---QLIEVEWEAt-----PTRKVHHIILLLKELKGIFSYLENIFTLNDVRLISEKIEDC-GNGHGITNIIVS 633 Borrelia burgdo...
P47520       618 NLQNKKQl---KIIPLYWNIqqlklkPRKFRSYININGVWSEKTINKICQTIINGDGYIEKIIPKINkQKDEFDLNITLF 694 Mycoplasma geni...
P75386       631 ELANQKQp---KIIPLYWNAhqlkmrPRKFRCQINIRGVWSETTVNKIVQTIIEGDSYLERIIPKIDkQKDEFELNITMF 707 Mycoplasma pneu...
WP_001002218 670 KAMAEVDa-kVPMVYIEWHK------RDRTIYKMMFYLGEKKSVLAGLLTFLNRNECNIVGVSYLGYkDKYSSHCEVSFE 742 Helicobacter py...
P74007       732 IHDYQQLLGIMAKIKNMSDVMDLRR 756 Synechocystis sp. PCC 6803 substr. Kazusa
Q50638       761 MGDPKHLGHLLNAVRNVEGVYDVYR 785 Mycobacterium tuberculosis
O67012       669 VKNKEHLEKIMKKIKSVEGVKICKR 693 Aquifex aeolicus VF5
P17580       675 ARDRVHLANIMRKIRVMPDVIKVTR 699 Escherichia coli
P43811       648 VKDIKHLANIVHRIKGITGVVNVKR 672 Haemophilus influenzae Rd KW20
O51216       634 S-NAKNITKIISALKENPNILQIMQ 657 Borrelia burgdorferi B31
P47520       695 VNNYQQLLTLMDQITTKNISFSWKY 719 Mycoplasma genitalium G37
P75386       708 IDNYHQLITIMEQITTKNISYVWKY 732 Mycoplasma pneumoniae M129
WP_001002218 743 IATDKADWIRALINRKYQDRIVELS 767 Helicobacter pylori
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