2EX2


Conserved Protein Domain Family
PBP4

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TIGR00666: PBP4 
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D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family
In E. coli, this protein is known as penicillin binding protein 4 (dacB). A signal sequence is cleaved from a precursor form. The protein is described as periplasmic in E. coli (Gram-negative) and extracellular in Actinomadura R39 (Gram-positive). Unlike some other proteins with similar activity, it does not form transpeptidation. It is not essential for viability. This family is related to class A beta-lactamases. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]
Statistics
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PSSM-Id: 200042
Aligned: 6 rows
Threshold Bit Score: 401.488
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2EX2_A        26 ASAPAIDYHSQQMALPASTQKVITALAALIQLGPDFRFTTTLETKGNVENGVLKGDLVARFGADPTLKRQD--------- 96  Escherichia coli
P39844        64 TGAVLYEHSGDTRMRPASSLKLLTAAAALSVLGENYSFTTEVRTDGTLKGKKLNGNLYLKGKGDPTLLPSD--------- 134 Bacillus subtil...
P45161        52 QNQIIADYNGSTFMLSASTQKVFTAVAAKLALDDQFQFETALLSNGKIQNGNLDGNLIVRFTGDPDLTRGQ--------- 122 Haemophilus inf...
P24228        45 ASAPAIDYHSQQMALPASTQKVITALAALIQLGPDFRFTTTLETKGNVENGVLKGDLVARFGADPTLKRQD--------- 115 Escherichia col...
WP_010873596  73 DSQPIYQYQADRFFIPASNQKLITTAMALQELGPNFRFTTQVYQR----DGGKKVQVIS--SGDPSFDVDD--------- 137 Synechocystis s...
WP_003917207  46 TGQELWQRLDDVPLVPASTNKILTAAAALLTLDRQARISTRVVAG----GQNPQGPVVLVGAGDPTLSAAPpgqdtwyhg 121 Mycobacterium t...
2EX2_A        97 ---IRNMVATLKKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQCFSAPPAA------AIVDRNCfsvs--------- 158 Escherichia coli
P39844       135 ---FDKMAEILKHSGVKVIKGNLIGDDTWHDDMRLSPDMPWSDEYTYYGAPISAltaspnEDYDAGTvivevtpnqkege 211 Bacillus subtil...
P45161       123 ---LYSLLAELKKQGIKKINGDLVLDTSVFSSHDRGLGWIWNDLTMCFNSPPAA------ANIDNNCfyaeldanknpge 193 Haemophilus inf...
P24228       116 ---IRNMVATLKKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQCFSAPPAA------AIVDRNCfsvslysapkpgd 186 Escherichia col...
WP_010873596 138 ---LTAIAKGLKDRGVTAIEELELVDTIAPQDYQR-PSWEWDDLHYGYAPPVNG------AILTGNQviltltpqnlgep 207 Synechocystis s...
WP_003917207 122 aarIGDLVEQIRRSGVTPTA--VQVDASAFSGPTMAPGWDPADIDNGDIAPIEA------AMIDAGR------------- 180 Mycobacterium t...
2EX2_A       159 --------------------------------------------------lysaPKPGDMAFIRVASYYpvtmfsqvrtl 188 Escherichia coli
P39844       212 epavsvspktdyitikndak--ttaagsekdltierehgtntitiegsvpvdanKTKEWISVWEPAGYA----------- 278 Bacillus subtil...
P45161       194 ivkinvpaqfpiqvfgqvyv--adsneapycqldvvvhdnnryqvkgclarqykPFGLSFAVQNTDAYA----------- 260 Haemophilus inf...
P24228       187 mafirvasyypvtmfsqvrtlprgsaeaqyceldvvpgdlnrftltgclpqrsePLPLAFAVQDGASYA----------- 255 Escherichia col...
WP_010873596 208 ltptwsdpiagaqwqiinqt--etavdphqppqvqqifgqrqlvitgglppageTRSITLAVADPQQYF----------- 274 Synechocystis s...
WP_003917207 181 ------------------------------------------------------IQPTTVNSRRSRTPA----------- 195 Mycobacterium t...
2EX2_A       189 prgsaeaqyceldvvpGDLNRFTLTgclpqrseplplafavQDGASYAGAIL-KYELKQAGitwsgtllrqtqvnepgTV 267 Escherichia coli
P39844       279 ----------------LDLFKQSLK----------------KQGITVKGDIK-TGEAPSSS-----------------DV 308 Bacillus subtil...
P45161       261 ----------------AEIIQRQLR----------------QLGIEFNGKVL-LPQKPQQG-----------------QL 290 Haemophilus inf...
P24228       256 ----------------GAILKDELK----------------QAGITWSGTLLrQTQVNEPG-----------------TV 286 Escherichia col...
WP_010873596 275 ----------------LASLQQKLA----------------EQGISVSTSIV-SANTKAIA-----------------PA 304 Synechocystis s...
WP_003917207 196 ----------------LDAGRELAK----------------ALGLDPAAVTI-ASAPAGAR-----------------Q- 224 Mycobacterium t...
2EX2_A       268 -VASKQSAPLHDLLKIMLKKSDNMIADTVFRMIGHArFNVPGTWRAGSDAVRQILrQQAGVDIGNTIIADGSGLSRHNLI 346 Escherichia coli
P39844       309 -LLSHRSMPLSKLFVPFMKLSNNGHAEVLVKEMGKV-KKGEGSWEKGLEVLNSTL-PEFGVDSKSLVLRDGSGISHIDAV 385 Bacillus subtil...
P45161       291 -LAKHLSKPLPDLLKKMMKKSDNQIADSLFRAVAFNyYKRPASFQLGTLAVKSIL-QKQGIRFGNSILADGSGLSRHNLV 368 Haemophilus inf...
P24228       287 -VASKQSAPLHDLLKIMLKKSDNMIADTVFRMIGHArFNVPGTWRAGSDAVRQILrQQAGVDIGNTIIADGSGLSRHNLI 365 Escherichia col...
WP_010873596 305 pLLALTSPPLWTLIKTVNQDSNNLYAEALLNAIQPP-SQATD-WQSYVERL--------GLATTTVRLRDGSGLSRQDLV 374 Synechocystis s...
WP_003917207 225 -LAVVQSAPLIQRLSQMMNASDNVMAECIGREVAVA-INRPQSFSGAVDAVTSRL-NTAHIDTAGAALVDSSGLSLDNRL 301 Mycobacterium t...
2EX2_A       347 APATMMQVLQYIA--QHDNELNFISMLPLAGYDGSL-QYR--AGLHQAGVDGKVSAKTGSLQGVYNLAGFITTASGQRMA 421 Escherichia coli
P39844       386 SSDQLSQLLYDIQ--DQSWFSAYLNSLPVAGNPDRMvGGTlrNRMKGTPAQGKVRAKTGSLSTVSSLSGYAETKSGKKLV 463 Bacillus subtil...
P45161       369 APKTMLSVLEYIA--KNEDKLHLMETFPIAGVDGTI-SGR--GGLISPPLVKNVIAKTGSLKGVYNLAGFMTNARGEKVA 443 Haemophilus inf...
P24228       366 APATMMQVLQYIA--QHDNELNFISMLPLAGYDGSL-QYR--AGLHQAGVDGKVSAKTGSLQGVYNLAGFITTASGQRMA 440 Escherichia col...
WP_010873596 375 TPQALVQLLINQT--QKSTGTIYQQSLAVAGRSGTL--ER---SFADTPLVGKMRGKTGTLTGVVSLTGYVENQQWGTVA 447 Synechocystis s...
WP_003917207 302 TARTLDATMQAAAgpDQPALRPLLDLLPIAGGSGTL-GERflDAATDQGPAGWLRAKTGSLTAINSLVGVLTDRSGRVLT 380 Mycobacterium t...
2EX2_A       422 FVQYLSG 428 Escherichia coli
P39844       464 FSILLNG 470 Bacillus subtilis subsp. subtilis str. 168
P45161       444 FVQFING 450 Haemophilus influenzae Rd KW20
P24228       441 FVQYLSG 447 Escherichia coli K-12
WP_010873596 448 FSFMVNN 454 Synechocystis sp. PCC 6803
WP_003917207 381 FAFISNE 387 Mycobacterium tuberculosis
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