3ZQ4


Conserved Protein Domain Family
MG423

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TIGR00649: MG423 
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beta-CASP ribonuclease, RNase J family
This family of metalloenzymes includes RNase J1 and RNase J2, involved in mRNA degradation in a wide range of organism. [Transcription, Degradation of RNA]
Statistics
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PSSM-Id: 273195
Aligned: 10 rows
Threshold Bit Score: 590.479
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3ZQ4_A         9 TAVFALGGLGEIGKNTYAVQFQDEIVLIDAGIKFP-----ED----ELLGID----YVIPDYTYLVKNEDKIKGLFITHG 75  Bacillus subtilis
Q45493         9 TAVFALGGLGEIGKNTYAVQFQDEIVLIDAGIKFP-----ED----ELLGID----YVIPDYTYLVKNEDKIKGLFITHG 75  Bacillus subtil...
P54123        10 LKILPLGGLHEIGKNTCVFEYDDEILLLDAGLAFP-----TD----DMHGVN----VVLPDMTYLRENREKIKGMVVTHG 76  Synechocystis s...
P56185       141 VKITPLGGLGEIGGNMMVIETPKSAIVIDAGMSFP-----KE----GLFGVD----ILIPDFSYLHQIKDKIAGIIITHA 207 Helicobacter py...
P47662         4 IKFFALGGQDERGKNCYVLEIDNDVFIFNVGSLTP-----TT----AVLGVK----KIIPDFSWIQENQARVKGIFIGNA 70  Mycoplasma geni...
P75174         4 INFFAFGGQDERGKNCFVLEINNDVFIFNVGSLTP-----TT----AVLGVK----KIIPDFSWIQENQARIKGIFIGNP 70  Mycoplasma pneu...
Q58271         3 LEIIAIGGYEEVGRNMTAVNVDGEIIILDMGIRLDrvlihEDtdisKLHSLEliekGIIPNDTVMKNIEGEVKAIVLSHG 82  Methanocaldococ...
WP_003231875   9 VRIIALGGVGEIGKNLYVIEIDSDIFVVDAGLMHP-----EN----EMLGID----VVIPDISYLIERADRVKAIFLTHG 75  Bacillales
WP_010868038   8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDrvlihEDvefqKMSSKDlrklGAIPDDRPIRN--KKVVAIALSHG 85  Pyrococcus abyssi
WP_010875689   3 VEVIAIGGYEEVGKNMSAVKVGDDVVIFDMGIHLDrvhihEDtdiaRMHSLDlierGVIPDDTLMKDVDGKVRAIVFTHG 82  Methanothermoba...
3ZQ4_A        76 HEDHIGGIPYLLRQVnIp-VYGGKLAIGLLRNKLE-EHGLLRQTK-LNIIGEDDIVKF---RKTAVSFFRTTHSIPDSYG 149 Bacillus subtilis
Q45493        76 HEDHIGGIPYLLRQVnIp-VYGGKLAIGLLRNKLE-EHGLLRQTK-LNIIGEDDIVKF---RKTAVSFFRTTHSIPDSYG 149 Bacillus subtil...
P54123        77 HEDHIGGIAYHLKQFdIpiIYGPRLAMALLRDKLE-EAGMLERTN-LQTVSPREMVRLg--KSFVVEFIRNTHSIADSYC 152 Synechocystis s...
P56185       208 HEDHIGATPYLFKELqFp-LYGTPLSLGLIGSKFD-EHGLKKYRSyFKIVEKRCPISVg--E-FIIEWIHITHSIIDSSA 282 Helicobacter py...
P47662        71 ITENLGSLEFLFHTVgFfpIYTSSIGASIIKSKIN-ENKLNIARD-KLEIHELKPLETieiSNHSITPFKVSSSLPSSFG 148 Mycoplasma geni...
P75174        71 VTENIGSLEFLFHTVgFfpIYTSTIGAVVIKTKIH-ENKLNIPHD-ELEIHELKPLETvkiGHHNITPFKVSSSIPSSFG 148 Mycoplasma pneu...
Q58271        83 HLDHIGAVPKLAHRY-NapIIGTPYTIELVKREILsEKKFDVRNP-LIVLNAGESIDLt--PNITLEFIRITHSIPDSVL 158 Methanocaldococ...
WP_003231875  76 HDENIGGVFYLLNKLsVp-VYGTKLTLALLREKLK-QYGHNRKTD-LREIHSKSVITF---ESTKVSFFRTIHSIPDSVG 149 Bacillales
WP_010868038  86 HLDHIGAVGKLAPHYpDvpIYGTPYTIRLAKSEIKgEEYFEVTNP-LYETNYGEIVQVs--ENLAIEFVQITHSIPQSSI 162 Pyrococcus abyssi
WP_010875689  83 HLDHIGAVAKLAHRYqa-pIIATPYTIALIERTIKaERKFNVLNT-LQVLNAGEKCQIs--PGITLEFIQSTHSIPQSVI 158 Methanothermoba...
3ZQ4_A       150 IVVKTPPGNIVHTGDFKFDFTPVg-EPANLTKMAEIGKEGVLCLLSDSTNSE--NPEFTMSERRVGESIHDIFRKVDGR- 225 Bacillus subtilis
Q45493       150 IVVKTPPGNIVHTGDFKFDFTPVg-EPANLTKMAEIGKEGVLCLLSDSTNSE--NPEFTMSERRVGESIHDIFRKVDGR- 225 Bacillus subtil...
P54123       153 LAIHTPLGVVMHSGDFKIDHTPIdgEFFDLQKVAEYGEKGVLCLLSDSTNAE--VPGITPSEASVIPNLDRVFSQAEGR- 229 Synechocystis s...
P56185       283 LAIQTKAGTIIHTGDFKIDHTPVdnLPTDLYRLAHYGEKGVMLLLSDSTNSH--KSGTTPSESTIAPAFDTLFKEAQGR- 359 Helicobacter py...
P47662       149 FALNTDNGYIVFIDDFIVLNDKNiaFENQLNQIIPKLSDNTLLLITGVGLVGr-NSGFTTPKHKSLEQLNRIITPAKGR- 226 Mycoplasma geni...
P75174       149 FALHTDDGYIVYVDDFIVLNDKNiaFENQLNQIIPQVANKTLLLITGVGLVGr-NTGFTTPKHKSLEQLNRIIASAKGR- 226 Mycoplasma pneu...
Q58271       159 PVLHTPYGSIVYGNDFKFDNFPVvgERPDYRAIKKVGKNGVLCFISETTRIN--HEGKTPPEIIASGLLKNDLLAADNDk 236 Methanocaldococ...
WP_003231875 150 VSFKTSLGSIVCTGDFKFDQTPAlnQTCDIGEIAKIGNSGVLALLSDSANAE--RPGYTPSEAAVSGEISDALYNSQNR- 226 Bacillales
WP_010868038 163 VVIHTPEGAVVYACDYKFDNNHPygERPDYKRLKELGKEGVKVLIAESTRVA--EETKTPSEAVAKMLLEDFFLYEGMEa 240 Pyrococcus abyssi
WP_010875689 159 AALHTPEGIIVYALDFKFDDHQKisPPPDYHRLRELGRKGVLAMIVETTRANekQEVKTHSEKVARIVLEDIMKNPLEEk 238 Methanothermoba...
3ZQ4_A       226 --IIFATFASNIHRLQQVIEAAVQNGRKVAVFGRSMESAIEIGQTLGYINC--------PK---------NTFI--EHNE 284 Bacillus subtilis
Q45493       226 --IIFATFASNIHRLQQVIEAAVQNGRKVAVFGRSMESAIEIGQTLGYINC--------PK---------NTFI--EHNE 284 Bacillus subtil...
P54123       230 --LMVTTFASSVHRVNIILSLAQKHQRKVAVVGRSMLNVIAHARKLGYIKC--------PD---------NLFV--PLKA 288 Synechocystis s...
P56185       360 --VIMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSMEKNLDIARELGYIHL--------PY---------QSFI--EANE 418 Helicobacter py...
P47662       227 --IFVACYDSNAYSVMTLAQIARMQNRPFIIYSQSFVHLFNTIVRQKLFNN--------TH---------LNTI--SIEE 285 Mycoplasma geni...
P75174       227 --VFAACYDSNAYSVMTLAQIARMQNRPFVIYSHSFVHLFNAIVRQKLFNN--------TH---------LNTI--SIEE 285 Mycoplasma pneu...
Q58271       237 hgIIVTTFSSHIARIKSITDIAEKMGRTPVLLGRSMMRFCGIAQDIGLVKF--------PEdlriygdpsSIEM--ALKN 306 Methanocaldococ...
WP_003231875 227 --VIIAVFASNINRIQQVIHAAAQNGRKIAVAGKNLQSVLQLARKLGYIEA--------DD---------ELFI--SVQD 285 Bacillales
WP_010868038 241 dgLIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMkgsrvlrsPN---------AVSK--VLKE 309 Pyrococcus abyssi
WP_010875689 239 tgMIVTTFSSHMERIQAISDIASKSDRQMLLLGRSMERYCGLAEAMGILKL--------PE---------NASIygSPKA 301 Methanothermoba...
3ZQ4_A       285 INRMp------ANKVTILCTGSQGEPMAALSRIANGThRQISINPGDTVVFSSSPIPGNT-ISVSRTIN-QLYRAGAEVI 356 Bacillus subtilis
Q45493       285 INRMp------ANKVTILCTGSQGEPMAALSRIANGThRQISINPGDTVVFSSSPIPGNT-ISVSRTIN-QLYRAGAEVI 356 Bacillus subtil...
P54123       289 ARNLp------DQQQLILTTGSQGEPLAAMTRISNGEhPQIKIRQGDTVVFSANPIPGNT-IAVVNTID-RLMMQGANVI 360 Synechocystis s...
P56185       419 VAKYp------DNEILIVTTGSQGETMSALYRMATDEhRHISIKPNDLVIISAKAIPGNE-ASVSAVLN-FLIKKEAKVA 490 Helicobacter py...
P47662       286 INNS--------TNSIVVLTSPPDKLYAKLFKIGMNEdERIRYRKSDTFIFMTPKVAGYEeIEAQILDDiARNEVSYYNL 357 Mycoplasma geni...
P75174       286 INNS--------TNAIVVLTAPPDKLYAKLFKIGTNEdERVRYRKTDSFIFMIPRIAGYEeLEAQILDDvARNEVSYYNL 357 Mycoplasma pneu...
Q58271       307 IVKEg------KEKYLIIATGHQGEEGAVLSRMATNK-TPYKFEKYDCVVFSADPIPNPMnAAQRYMLEsRLKLLGVRIF 379 Methanocaldococ...
WP_003231875 286 VKKYp------KREVAIITAGSQGEPLAALTRMANKAhKQLNIEEGDTVVIASTPIPGQE-LIYSKTVD-LLARAGAQVI 357 Bacillales
WP_010868038 310 VSQA-------RENYLLIVTGHQGEPGAILTRMANGE--LYDIGPRDTVVFSAGVIPNPLnVAQRYALEtKLRMKGVRMI 380 Pyrococcus abyssi
WP_010875689 302 VNRAlaraeakREDYLLITTGHQGEPDALLPRIANAK-TQFRIQRGDNVVISAPVIPNPMnVANRNLMErRLASSGARIY 380 Methanothermoba...
3ZQ4_A       357 ---HGplndIHTSGHGGQEEQKLMLRLIKPKFFMPIHGEYRMQKMHVKLATDCGIP-EENCFIMDNGEVLALKGdEA 429 Bacillus subtilis
Q45493       357 ---HGplndIHTSGHGGQEEQKLMLRLIKPKFFMPIHGEYRMQKMHVKLATDCGIP-EENCFIMDNGEVLALKGdEA 429 Bacillus subtilis ...
P54123       361 ---YGkhqgIHVSGHASQEEHKMLLALTRPKFFVPVHGEHRMLVKHSQMAQAQGIP-SENIVIVNNGDVIELTGdRI 433 Synechocystis sp. ...
P56185       491 ---YQefdnIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEYNHVARHKQTAISCGVP-EKNIYLMEDGDQVEVGPaFI 563 Helicobacter pylor...
P47662       358 ---GR----EILSIQASDEDMKFLVSSLKPKYIIPTGGLYRDFINFTMVLKQAGAE-QNQILILFNGEVLTIENkKL 426 Mycoplasma genital...
P75174       358 ---GR----EILSINASDEDMKFLVTSLKPKYIIPTSGLYRDFINFTMVMKQAGVE-QSQVLIPFNGEVLAINHkQI 426 Mycoplasma pneumon...
Q58271       380 ---KG----AHVSGHAAKEDHRDMLRWLNPEHIIPSHGDFNLTAEYTKLAEEEGYRlGEDVHLLRNGQCLSFER-II 448 Methanocaldococcus...
WP_003231875 358 faqKR----VHVSGHGSQEELKLMINLLKPKYLIPVNGEYRMQKAHSKIAEETGMK-RSDIFLIEKGDVVEFRGqNV 429 Bacillales
WP_010868038 381 ---KN----LHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRMLTHYAELAEEEGYMiGKEVFISRNGHVVEIPGsle 450 Pyrococcus abyssi
WP_010875689 381 ---TN----AHVSGHAGREDHRDFIRMLNPMHIIPAHGDLSMLSAYAEIAEEEGYKlGNDIHILRNGQAQVFNGgir 450 Methanothermobacte...
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