1CW0


Conserved Protein Domain Family
vsr

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TIGR00632: vsr 
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DNA mismatch endonuclease Vsr
All proteins in this family for which functions are known are G:T mismatch endonucleases that function in a specialized mismatch repair process used usually to repair G:T mismatches in specific sections of the genome. This family was based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Members of this family typically are found near to a DNA cytosine methyltransferase. [DNA metabolism, DNA replication, recombination, and repair]
Statistics
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PSSM-Id: 211591
Aligned: 5 rows
Threshold Bit Score: 171.956
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1CW0_A         1 ADVHD--------------KA----TRSKNMRAI-ATRDTAIEKRLASLLTGQGLAFR----VQDAS-LPGRPDFVVDEY 56  Escherichia coli
Q56829         2 TDRLS--------------PE----RRRYLMQQV-RSKNTRPEKAVRSLLHSIGYRFR----LHRKD-LPGTPDIVFPSR 57  Xanthomonas ory...
P50186         2 SDKSSraaararahasgtyPAplnaGRSRNMQAN-RRSGTKPEAALRSALFKLGYRYRkdflLRLGDgVKVKPDIVFTAR 80  Lechevalieria a...
WP_000786001   2 ADVHD--------------KA----TRSKNMRAI-ATRDTAIEKRLASLLTGQGLAFR----VQDAS-LPGRPDFVVDEY 57  Escherichia coli
P36434         1 MDKLT--------------PE----QRKKCMKASsKNKGTKPELLLAKYLWALGLRYR----KNDRS-IFGTPDLSFKRY 57  Haemophilus par...
1CW0_A        57 RCVIFTHGCFWHHHHC-YLFKVPATRTEFWLEKIGKNVERDRRDISRLQELGWRVLIVWECA 117 Escherichia coli
Q56829        58 RLVLFVHGCFWHGHGC-RIGQLPKSRLDYWSPKIEANRARDQRKEAALAAEGWRVAVVWQCE 118 Xanthomonas oryzae pv. oryzae KAC...
P50186        81 KVAVFIDGCFWH--VCpDHGRQPTTNEWYWSPKLRRNVERDRTVNQSLTNAGWRVLRVWEHE 140 Lechevalieria aerocolonigenes
WP_000786001  58 RCVIFTHGCFWHHHHC-YLFKVPATRTEFWLEKIGKNVERDRRDISRLQELGWRVLIVWECA 118 Escherichia coli
P36434        58 KIAIFIDGEFWHGKDWdIRKYDIKSNKDFWISKIEHNMNRDKKVNDYLISNGWVIFRFWGKD 119 Haemophilus parainfluenzae
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