1LMZ


Conserved Protein Domain Family
tag

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TIGR00624: tag 
Click on image for an interactive view with Cn3D
DNA-3-methyladenine glycosylase I
All proteins in this family are alkylation DNA glycosylases that function in base excision repair This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Statistics
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PSSM-Id: 129711
View PSSM: TIGR00624
Aligned: 6 rows
Threshold Bit Score: 300.648
Threshold Setting Gi: 499210568
Created: 7-Oct-2014
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1LMZ_A         2 ERCGWVSQDP-----LYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDV 76  Escherichia coli B
CAA74898       2 PRCFWCSDDP-----LYMAYHDQEWGTPLRDAQGLFELLLLEGFQAGLSWITVLRKRERYREVLYGFDVQRVAQMSDAEI 76  Pseudomonas flu...
P05100         2 ERCGWVSQDP-----LYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDV 76  Escherichia col...
KAN94842       7 VRCPWAEVRPgpdaqLYRDYHDNEWGRPLYGRVALFERMSLEAFQSGLSWLIILRKRENFRRAFSGFDIDKIARYTDTDV 86  Mycobacterium b...
WP_031705333   7 VRCPWAEVRPgpdaqLYRDYHDNEWGRPLYGRVALFERMSLEAFQSGLSWLIILRKRENFRRAFSGFDIDKIARYTDTDV 86  Mycobacterium b...
WP_010908108   7 VRCGWADVRSglhwqLYRNYHDQEWGSPVRCGVALFERMSLEAFQSGLSWLLILRKRENFRRAFSGFDIEEVARYTHADV 86  Mycobacterium l...
1LMZ_A        77 ERLVQDAGIIRHRGKIQAIIGNARAYLQM-EQNgepfADFVWSFVNHQPQMTQATTL-SEIPTSTPASDALSKALKKRGF 154 Escherichia coli B
CAA74898      77 DELMLDPGIIRNRLKLKAARRNAQAWLAL-EDP----VTFLWSFVGDKPIINHFKDR-TEVPAITPEALAMSKGLKKAGF 150 Pseudomonas flu...
P05100        77 ERLVQDAGIIRHRGKIQAIIGNARAYLQM-EQNgepfVDFVWSFVNHQPQVTQATTL-SEIPTSTSASDALSKALKKRGF 154 Escherichia col...
KAN94842      87 RRLLADDGIVRNRAKIEATIANARAAADLgSSEd--lSELLWSFA---PPPRPRPVDgSEIPSVSTESKAMSRELKRRGF 161 Mycobacterium b...
WP_031705333  87 RRLLADDGIVRNRAKIEATIANARAAADLgSSEd--lSELLWSFA---PPPRPRPVDgSEIPSVSTESKAMSRELKRRGF 161 Mycobacterium b...
WP_010908108  87 QRLLFDDGIVRNRVKIEATIANARAAAELgSAAd--lSELLWSFA---PQPRSRPADgSEIPSTSAEAKAMARELKRRGF 161 Mycobacterium l...
1LMZ_A       155 KFVGTTICYSFMQACGLVNDHVVGCCCY 182 Escherichia coli B
CAA74898     151 TFVGPTICYALMQASGMVMDHTQDCDRY 178 Pseudomonas fluorescens
P05100       155 KFVGTTICYSFMQACGLVNDHVVGCCCY 182 Escherichia coli K-12
KAN94842     162 RFVGPTTAYALMQATGMVDDHIQACWVP 189 Mycobacterium bovis B2 7505
WP_031705333 162 RFVGPTTAYALMQATGMVDDHIQACWVP 189 Mycobacterium bovis
WP_010908108 162 RFVGPTTAYALMQATGMVDDHICTCWVP 189 Mycobacterium leprae
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