4LTY


Conserved Protein Domain Family
sbcd

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TIGR00619: sbcd 
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exonuclease SbcD
All proteins in this family for which functions are known are double-stranded DNA exonuclease (as part of a complex with SbcC homologs). This complex functions in the initiation of recombination and recombinational repair and is particularly important in regulating the stability of DNA sections that can form secondary structures. This family is likely homologous to the MRE11 family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Statistics
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PSSM-Id: 273178
Aligned: 8 rows
Threshold Bit Score: 317.826
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4LTY_C        15 MRILHTSDWHLGQNFYS---------KSREAEHQAFLDWLLETAQTHQVDAIIVAGDVFDTGSPPSYARTLYNRFVVNLQ 85  Escherichia col...
O51769         4 YKILHTSDWHIGKKIEN---------FSILKEQKNFLYFLLEFIKKENIDLLLVAGDVYDSKRPGFEEQRLVNNFFYELS 74  Borrelia burgdo...
P13457         1 MRILHTSDWHLGQNFYS---------KSREAEHQAFLDWLLETAQTHQVDAIIVAGDVFDTGSPPSYARTLYNRFVVNLQ 71  Escherichia coli
O68033         1 MRILHTADWHIGQTLNG---------WSREAEHRAFLADLGEILLAEQVDALLVAGDVFDGLNPSGEAQRLLYAALAGYV 71  Rhodobacter cap...
WP_010881231   1 MRLIHLSDIHAGKNLGR---------VSRNEDVVYALNQVVDFCKENKPDLVLVAGDVFDKANPDNEAKEIIFDFFLKLH 71  Aquifex aeolicus
WP_010882072   1 MKILHTADLHLGKTLHE---------VSLFASQKKMLGDLCTLLAQDNYAALIIAGDIYDRCVPSAESVSLFSSFLQNIK 71  Treponema
AAA22202       1 MRILHTADWHLGKTLEG---------RSRLSEQADVLDELNTIVKDEQIDAIVMAGDAFDTVNPPALAEQLFYESLSALS 71  Bacillus subtilis
WP_010873409   2 LKVLHLSDIHLGSGFSHghinpatglNTRLEDFIQSLRLCIDRAIAEPADVVLFGGDAFPDATPPPYVQEAFAAEFRRLA 81  Synechocystis s...
4LTY_C        86 QTGC--HLVVLAGNHDSVATLNESRDIMAFLNTTVVASAGHAPQILPRRDGTPGAVLCPIPFLRPRDIITSQAGLNGIEK 163 Escherichia col...
O51769        75 FTSCk-WCVVISGNHDKKDYLSINKKLLSRFNFFLITEYDSDEQIVLLKDNGNLKFIVVCLPHINERLILGQNFDNIFGL 153 Borrelia burgdo...
P13457        72 QTGc--HLVVLAGNHDSVATLNESRDIMAFLNTTVVASAGHAPQILPRRDGTPGAVLCPIPFLRPRDIITSQAGLNGIEK 149 Escherichia coli
O68033        72 RANPrlQIVLTSGNHDPAQRLEAPEAVLRELGVHVLGTLSRGPGGMDLDRHLIPLRDRAGQIRAQVLALPFLRQADLPGL 151 Rhodobacter cap...
WP_010881231  72 SLNi--PSVVISGNHDSYEFMKSLKKLLQVIDVYVVPKPNLEECVLDVK------GLKIACLPYPSERVLTRAGEDSKLS 143 Aquifex aeolicus
WP_010882072  72 RSMPrlPIYLIPGNHDSAQRLSFAQELLKQQGVFIAQDPEESTRPHLLC----HEGETVQLFLLPFLHAGAFSYLDEENT 147 Treponema
AAA22202      72 DRGKr-PIVVIAGNHDNPDRLSAASPLTHENGIHLIGYPTTEPIHIEVP--SAGELLAVGALAYPSEARLNEVLSDTFDE 148 Bacillus subtilis
WP_010873409  82 DADi--PTVLLVGNHDQHSQGSGGASLCIYRTLAVPGFIVGDRLATHLIPTANGDLQIVTLPWLTRSTLLTRPETEGLSL 159 Synechocystis s...
4LTY_C       164 Qq----hLLAAITDYYQQHYADACKLRGD---QPLPIIATGHLTTVGASKSD-AVRDIYIGTLDAFPAQNFPPADYial- 234 Escherichia col...
O51769       154 EdqysskLFLENLENAYREKISNLSNFLEnkyKGIPKILMAHSFFGSSKKID-TLGGSYIIPFNVFGNGFSYVALG---- 228 Borrelia burgdo...
P13457       150 Qq----hLLAAITDYYQQHYADACKLRGD---QPLPIIATGHLTTVGASKSD-AVRDIYIGTLDAFPAQNFPPADYial- 220 Escherichia coli
O68033       152 Rlga-eeGTEGAVTAALRALLAETVARAAaiaGTLPLIAMAHLTCAGGLESAgAERRILIGGDHAVPPDVFPPALAhva- 229 Rhodobacter cap...
WP_010881231 144 Y------A------VLVEKAIKYLYEKVK---DAPLKVLLSHLFIAGSKYTR-TEREATITDYYAVEPSAIPEGFDyval 207 Aquifex aeolicus
WP_010882072 148 T-------CLIHTQSELLQEASRRLQRAVs--LDTPSILVAHLFTQKGISCE-SERPFVGNAVYADPHWFDFFTYVal-- 215 Treponema
AAA22202     149 K------LLRDHYDVKIRQAFEHMTSRFR---TDAVKIAASHIYVAGETKPI-QTGRLKSAVHTRWLLKACRQMPLtlr- 217 Bacillus subtilis
WP_010873409 160 E------AINLLLLKKLQPILEGEIRSLD---PQLPTILLAHLMADRATFGAeKTLSVGKGFTIPLALINRPEFDYvalg 230 Synechocystis s...
4LTY_C       235 -ghiHR-AQIIGGMEHVRYCGSPIPLSFDECGkSKY 268 Escherichia coli KO11FL
O51769       229 ----HI-HKFMKLRDNIVYSGSPMQYSFNETC-DKY 258 Borrelia burgdorferi B31
P13457       221 -ghiHR-AQIIGGMEHVRYCGSPIPLSFDECGkSKY 254 Escherichia coli
O68033       230 -lghLH-RPQSLDGGRVRYSGAPFPLSASEIGyDHG 263 Rhodobacter capsulatus SB 1003
WP_010881231 208 ghvhRY-QRIEKAPTHVYYTGSLFQLDFSEAGqEKF 242 Aquifex aeolicus
WP_010882072 216 ---gHL-HKCQKITERMYYSGSPLPYSFDEANtQKV 247 Treponema
AAA22202     218 -saiCIaRKRSSGRGRLRviqdlrsptaflkratln 252 Bacillus subtilis
WP_010873409 231 hvhkHQ-NLNPHNNPPIVYPGSIERVDFGEEKeDKG 265 Synechocystis sp. PCC 6803
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