Conserved Protein Domain Family
IF-2

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TIGR00487: IF-2 
translation initiation factor IF-2
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. [Protein synthesis, Translation factors]
Statistics
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PSSM-Id: 273102
Aligned: 7 rows
Threshold Bit Score: 934.184
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P72689  407 QKPEVIMLDRSLTVRDLADLLKISETDIIKRLFLKGVAVQITQTLDEETARMVAEsfEVAVETPERVAAAAKTTEMLDEa 486  Synechocystis sp. P...
P02995  305 AVNRDVVIGETITVGELANKMAVKGSQVIKAMMKLGAMATINQVIDQETAQLVAE--EMGHKVILRRENELEEAVMSDR- 381  Escherichia coli
P44323  244 VVKSDVVIGETITVAELANKMAVKATEIIKMMMKMGEMVTINQVIDQETAQLVAE--ELGHKVILRNENELEEAVLGDR- 320  Haemophilus influen...
O51741  297 PIPKSIDIMGSITVSDLARKMNLKSSDLIAKLMALGVMVTINEKIDSDTATILVE--EYGSKVNVVSIYDETVIEEEVE- 373  Borrelia burgdorfer...
P55972  362 VIQSTTAIPEEVRVYEFAQKANLNLADVIKTLFNLGLMVTKNDFLDKDSIEILAE--EFHLEISVQNTLEEFEVEEVLE- 438  Helicobacter pylori...
P47388   34 VKDGVFIYKGPLTVSEFASKTNIAVANIIKHFFLNGLALTVNSVLTNEQLADACVnfGFDFKMETEVTHENIVANIQFE- 112  Mycoplasma genitali...
P17889  132 ELPEKITFSGTLTVGALAEELGKEPSELIKKLMLLGVMATINQELDKDTIELIAS--EYGVETEEVIVLEETELEKYEEp 209  Bacillus subtilis s...
P72689  487 D-LDNLVRRPPVVTIMGHVDHGKTTLLDSIRKTKVAQGEAGGITQHIGAYHVEVEHNdkteQIVFLDTPGHEAFTAMRAR 565  Synechocystis sp. P...
P02995  382 DtGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETENG----MITFLDTPGHAAFTSMRAR 457  Escherichia coli
P44323  321 DvNAEKVTRAPVVTIMGHVDHGKTSLLDYIRKAKVAAGEAGGITQHIGAYHVEMDDGk---MITFLDTPGHAAFTSMRAR 397  Haemophilus influen...
O51741  374 D-QSKRVEKPPVITIMGHVDHGKTKLLSVLQNIDINQTESGGITQHIGAYTIVYNDRe----ITFLDTPGHEAFTMMRSR 448  Borrelia burgdorfer...
P55972  439 --G-VKKERPPVVTIMGHVDHGKTSLLDKIRDKRVAHTEAGGITQHIGAYMVEKNDK----WVSFIDTPGHEAFSQMRNR 511  Helicobacter pylori...
P47388  113 DsDDLLQPRPPIVTIMGHVDHGKTSLLDTIRKTNVTAKEFGGITQKIGAYQVKNHQNk---tITFIDTPGHEAFTLMRAR 189  Mycoplasma genitali...
P17889  210 DnEEDLEIRPPVVTIMGHVDHGKTTLLDSIRKTKVVEGEAGGITQHIGAYQIE-ENGk---kITFLDTPGHAAFTTMRAR 285  Bacillus subtilis s...
P72689  566 GAKVTDIAILVVAADDGVQPQTKEAISHAKAAGVPLIVAINKVDKPEANPDRIKQELSELGLLAEEWGGDTIMVPVSALN 645  Synechocystis sp. P...
P02995  458 GAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKA 537  Escherichia coli
P44323  398 GAKATDIVVLVVAADDGVMPQTIEAIQHAKAAGAPLVVAVNKIDKPEANLDRVEQELLQHDVISEKFGGDVQFVPVSAKK 477  Haemophilus influen...
O51741  449 GAQVTDIVVLVVSAIDGVMPQTIEAINHAKEANVPIIVAINKIDLPDSNPDKIKHQLSEYGLVSEDWGGDTIFVMISALK 528  Borrelia burgdorfer...
P55972  512 GAQVTDIAVIVIAADDGVKQQTIEALEHAKAANVPVIFAMNKMDKPNVNPDKLKAECAELGYNPVDWGGEHEFIPVSAKT 591  Helicobacter pylori...
P47388  190 GAKVTDIVVLVVAADDGIKKQTEEAISHAKSANTPIIVFINKMDKPTANPDLVIQQLNKFDLVPEAWGGKTIFVMGSALT 269  Mycoplasma genitali...
P17889  286 GAEVTDITILVVAADDGVMPQTVEAINHAKAAEVPIIVAVNKIDKESANPDRVMQELTEYGLVPEAWGGETIFVPLSALT 365  Bacillus subtilis s...
P72689  646 GDNLDGLLEMILLVSEVEELVANPNRQAKGTVIEANLDRTRGPVATLLIQNGTLRVGDAIVVGAVYGKIRAMIDDRGDKV 725  Synechocystis sp. P...
P02995  538 GTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEV 617  Escherichia coli
P44323  478 GTGVDDLLDAILLQSEVLELTAVKDGMASGVVIESYLDKGRGPVATILVQSGTLRKGDIVLCGFEYGRVRAMRDENGKEV 557  Haemophilus influen...
O51741  529 NIGISELLDMILLQSDMMLLKANPSKRAIGKVLDAKIDLGRGIVCSVIIEDGTLYVGDSFVGGACYGKVKALISEKGVSV 608  Borrelia burgdorfer...
P55972  592 GDGIDNLLETILIQAGIMELKAIEEGSARAVVLEGSVEKGRGAVATVIVQSGTLSVGDSFFAETAFGKVRTMTDDQGKSI 671  Helicobacter pylori...
P47388  270 GQGINELLDNILLLGEVEGYQANYNAHSSGYAIEVQTSKGLGPIANVIVKRGTLKLGDIVVLGPAYGRVRTMHDENGNSL 349  Mycoplasma genitali...
P17889  366 GKGIDELVEMILLVSEVEELKANPNRQAKGTVIEAELDKGRGSVATLLVQTGTLHVGDPIVVGNTFGRVRAMVNDIGRRV 445  Bacillus subtilis s...
P72689  726 EEASPSFAVEILGLGDVPAAGDEFEVFTNEKDARLQAEARAMEDRQTRLQQAMSsrkVTLSSISAQAQEGELKELNIILK 805  Synechocystis sp. P...
P02995  618 LEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQK---SKLENMFANMTEGEVHEVNIVLK 694  Escherichia coli
P44323  558 DEAGPSIPVELLGLSGVPAAGDEATVVRDEKKAREVALYRQGKFREVKLARQQK---AKLENMFSNMSEGDVAELNVIVK 634  Haemophilus influen...
O51741  609 KSVGPAKAISVLGFSSMPQAGDPFQVTKTEKEAKLISSKRQD-LKKYESSKNVKk--VTMLNLYDSIKEGALKELKIILK 685  Borrelia burgdorfer...
P55972  672 QNLKPSMVALITGLSEVPPAGSVLIGVENDSIARLQAQKRATYLRQKALSKSTK---VSFDELSEMVANKELKNIPVVIK 748  Helicobacter pylori...
P47388  350 KQATPSKPVQISGFDIMPVAGEKFIVFDDEKDAKLIANKFKEQQKQKANNLTVN------QTLKEQIKNKEIKILNLIFK 423  Mycoplasma genitali...
P17889  446 KTAGPSTPVEITGLNDVPQAGDQFLVFKDEKTARSVGEARAS--KQLEEQRSDKa-kLSLDDLFEQIKQGDVKDINLIVK 522  Bacillus subtilis s...
P72689  806 ADVQGSLGAILGSLEQLPQGEVQIRVLLASPGEVTETDVDLAAAS-GAIIIGFNTTLASGARQAADQEGVDIREYDIIYK 884  Synechocystis sp. P...
P02995  695 ADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAAS-NAILVGFNVRADASARKVIEAESLDLRYYSVIYN 773  Escherichia coli
P44323  635 ADVQGSVEAIVQALNELSTNEVKVKVVGSGVGGITETDATLATAS-NAIIVGFNVRADATARRVIEAENIDLRYYSIIYE 713  Haemophilus influen...
O51741  686 ADVQGSVEALKNSLEKLTNDEVRVRVVHSSAGVITETDISFASAS-DAIVIGFHVRPTAKAQVLADQEKVEIRKYNVIYD 764  Borrelia burgdorfer...
P55972  749 ADTQGSLEAIKNSLLELNNEEVAIQVIHSGVGGITENDLSLVSSSeHAVILGFNIRPTGNVKNKAKEYNVSIKTYTVIYA 828  Helicobacter pylori...
P47388  424 ADSDGSLQAIKQAVENINVAKISLSIIHAAVGQISESDIMLAKAS-GALLFSLNLGLSQTVKNIASLQGVKLEVHYHIPK 502  Mycoplasma genitali...
P17889  523 ADVQGSAEALTAALQKIEVEGVKVKIIHTGVGAITESDIILASAS-NAIVIGFNVRPDGNAKSTAEAENVDIRLHRIIYK 601  Bacillus subtilis s...
P72689  885 LLDDIQGAMEGLLDPEEIESSLGTAEVRAVFPVGR-GNIAGCYVQSGKIIRNRNLRVRRGDQVLFEGNIDSLKRIKEDVR 963  Synechocystis sp. P...
P02995  774 LIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKfGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVN 853  Escherichia coli
P44323  714 LLNEIKAAMSGMLEPEFKQEIIGLAEVRDVFRHPKfGAIAGCMVTEGVVKRNNPIRVLRDNVVIFEGELESLRRFKDDVS 793  Haemophilus influen...
O51741  765 AINDVRSVLEGMLEPDVEQQFIGFAEVRAVINVPKiGVIAGCYVSRGLIKRDAITNVMRDGLQIHSGKISSLKRFKDDVK 844  Borrelia burgdorfer...
P55972  829 LIEEMRSLLLGLMSPIIEEEHTGQAEVRETFNIPKvGTIAGCVVSDGVIARGIKARLIRDGVVIHTGEILSLKRFKDDVK 908  Helicobacter pylori...
P47388  503 LAEEIENILKGQLDPVYEEIEIGKAEVLQLWFHSKiGNIAGTIVKSGKIKRGNLCKLFRDKEIIFEGRIDSLKNEKTPVN 582  Mycoplasma genitali...
P17889  602 VIDEIEAAMKGMLDPEYEEKVIGQVEVRQTFKVSKiGTIAGGYVTEGTITRDSGLRLIRDGVVIFEGEVDVLKRFKDDVK 681  Bacillus subtilis s...
P72689  964 EVNAGYECGIGCSKFNDWKEGDIIEAYEMTMKRRTLA 1000 Synechocystis sp. PCC 6803 substr. Kazusa
P02995  854 EVRNGMECGIGVKNYNDVRTGDVIEVFEIIEIQRTIA 890  Escherichia coli
P44323  794 EVRNGMECGIGVKNYNDVKVGDQIEVFEVVEVKRSI- 829  Haemophilus influenzae Rd KW20
O51741  845 EVAEQYECGIMIDNYANIKEGDIIEAFEVKKVKKSFK 881  Borrelia burgdorferi B31
P55972  909 EVSKGYECGIMLDNYNEIKVGDVFETYKEIHKKRTL- 944  Helicobacter pylori 26695
P47388  583 LIETGKNCGIVINGCNDIKIGDIIVAYEKQIVKDGKL 619  Mycoplasma genitalium G37
P17889  682 EVSQGYECGITIKKYNDIREGDILEAFVMQEIERT-- 716  Bacillus subtilis subsp. subtilis str. 168
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