1NMP,4IWG


Conserved Protein Domain Family
YbgI_SA1388
?
TIGR00486: YbgI_SA1388 
Click on image for an interactive view with Cn3D
dinuclear metal center protein, YbgI/SA1388 family
The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members. [Unknown function, General]
Links
?
Statistics
?
PSSM-Id: 213534
Aligned: 10 rows
Threshold Bit Score: 253.467
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
Download Cn3D
PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection: 
1NMP_A     1 MKNTELEQLINEKLNSA-AISDYAP--NGLQVE---------GKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFW 68  Escherichia coli O1...
P75743     1 MKNTELEQLINEKLNSA-AISDYAP--NGLQVE---------GKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFW 68  Escherichia coli
O28497     1 MNLAEVVRFLDDFLEIN-SYQDVSN--NGLQVE---------GSEEVKKVAFAVDASMESFRAAKAVNADMLVVHHGLIW 68  Archaeoglobus fulgi...
O51424     1 MNVRDLSFKLNSIFDIN-KYEHIDKnlNGLQVGn--------INAKVNKVAFAVDASFSTLKEAK--GNDFLITHHGIFW 69  Borrelia burgdorfer...
O27214     4 IRIDSLIELMDRVAPPE-LALPGDR--IGYHGP----------EIEVEAVLVLMDYLEDVAVDGY---DLLVL-HHPPEV 66  Methanothermobacter...
P53081     8 AQLDKLVRSITKFYPQKyADKSWDN--TGLLIDcstaqvttaDANAKTKVLLTVDLTKSVAQEAVDANCNVIVAYHPFIF 85  Saccharomyces cerev...
O25613     2 ALVKEVLVVLNRLSPFE-LQESWDN--SGLNVGs--------ENSEFSEIVACLEITLKIALNAP--QNALIITHHPLIF 68  Helicobacter pylori...
P54472     5 VNGQQIIQLFEQFSPKA-YAVEGDK--IGLQIGt--------LNKPIKNVMVTLDVLESVIDEAIEKEVDLIIAHHPPIF 73  Bacillus subtilis s...
AAC21783  29 MNNLELEQLINQKLSSD-KINDYAP--NGLQVE---------GKTEIKKIITGVTASQALINYAISQNADAILVHHGYFW 96  Haemophilus influen...
4IWG_A     1 MKAKEIIEFIETFAPKD-LAIEGDN--IGLQVGd-------nLDKEIKKLGIALDPSLSVIKKAEKEGVDFLFTHHPLLK 70  Methanocaldococcus ...

1NMP_A    69 KGESPVIRGMKRNR-LKT-LLANDINLYGWHLPLDAHPElGNNAQLAALLGITV-------------------MGEIEP- 126 Escherichia coli O1...
P75743    69 KGESPVIRGMKRNR-LKT-LLANDINLYGWHLPLDAHPElGNNAQLAALLGITV-------------------MGEIEPl 127 Escherichia coli
O28497    69 GG-IGYIRGIVKRR-IEF-LLRSNLSLYAAHLPLDAHREvGNNAVILRKIGAEP-------------------QEEFGEy 126 Archaeoglobus fulgi...
O51424    70 SK-KERIVSNMYDK-TKF-LIENNLALYSVHLPMDAHSVySHSKVFSDFLGLKN-------------------SFAFANy 127 Borrelia burgdorfer...
O27214    67 EP---------------------PIPYLTVHSNWDVADG-GACDALADALGLDV--------------------ESFLDp 104 Methanothermobacter...
P53081    86 PSWNRLSPHTNPQHeTAIkLIQYGISVYCPHTAVDAARG-GVNDWLVRGLNNGEn-----------------vAKSYALe 147 Saccharomyces cerev...
O25613    69 KPLKTLNDEIYPGNiLKI-LIQKNVSVISMHTNFDKTHL---NKHFAHALLEFD--------------------GLVEK- 123 Helicobacter pylori...
P54472    74 RSLKHISTDQPAGRlIEK-CLKHDIAVYAAHTNLDVADG-GVNDLLAEALELSEtevlaptytdplkklavyvPKEYEEq 151 Bacillus subtilis s...
AAC21783  97 KSETPCIRGMKGKR-IKA-LLVNDINLYGYHLPLDVHPElGNNAQLAKLLDIEN-------------------LQPLEKg 155 Haemophilus influen...
4IWG_A    71 DP-IRNFTGVIYKK-LKI-LMENDIILYSAHTNLDICKN-GLNDALAELYNLEN-------------------PKPLYDn 127 Methanocaldococcus ...

1NMP_A       --------------------------------------------------------------------------------     Escherichia coli O1...
P75743       --------------------------------------------------------------------------------     Escherichia coli
O28497       --------------------------------------------------------------------------------     Archaeoglobus fulgi...
O51424       --------------------------------------------------------------------------------     Borrelia burgdorfer...
O27214       --------------------------------------------------------------------------------     Methanothermobacter...
P53081   148 tvsge--------------------------------------------------------------------------- 152 Saccharomyces cerev...
O25613       --------------------------------------------------------------------------------     Helicobacter pylori...
P54472   152 vraalgnagaghigeyshcafssegigsfkpldgakpfigevgelelvhevrletvfpksvekavinamikshpyeevay 231 Bacillus subtilis s...
AAC21783 156 s------------------------------------------------------------------------------- 156 Haemophilus influen...
4IWG_A       --------------------------------------------------------------------------------     Methanocaldococcus ...

1NMP_A   127 -------------LVp-WGELTMPVPGLELASWIEARLGRKPLWCGDTGP------EVVQRVAWCTGGGQS---FIDSAA 183 Escherichia coli O1...
P75743   128 -------------VP--WGELTMPVPGLELASWIEARLGRKPLWCGDTGP------EVVQRVAWCTGGGQS---FIDSAA 183 Escherichia coli
O28497   127 -------------KGv-KIGFSAKLEKATAVGEIAEKLG--PAMVLPFGE------ERVRKVAAVSGKGCF---ALNEAI 181 Archaeoglobus fulgi...
O51424   128 -------------GGvnLGIIADSVFSFSEILEKIKKEN-KHILFSKKFK------ESVNKVAIVSGSGYS---FFEEAL 184 Borrelia burgdorfer...
O27214   105 ------------dTG--VDRICRADLSLEELLERTGVLN-PETLRVVNPR------EYVDRVAVVSGFGLSdksLIMRAW 163 Methanothermobacter...
P53081   153 -------tddligYGr-FVEFNKDISLEQIVKNVKRVLRVPYVQVASLAApsawnqLKIKKVAVCAGSGSG----VFKQL 220 Saccharomyces cerev...
O25613   124 --------------GlmLVKENANIEFDALVKKIKSSLGVGSLACVKSS-------QTIKDLAFVCGSGAS-----MFSS 177 Helicobacter pylori...
P54472   232 diypveqtpaekgLGr-VGTLKNEMTLKEFALFVKDKLDVNGVRMVGDAD------SMVKKVAVLGGDGNK---YIHHAK 301 Bacillus subtilis s...
AAC21783 157 -----------vsIPv-WGELKEPMTGKDFAEKIEKVLNRKPLICIENGP------HLIRKIGICTGGGQG---YIDLAA 215 Haemophilus influen...
4IWG_A   128 ------------gLGr-VGIFKGSFEEFLEITKKYIHKN--PIVVKSKEV------DDNFKLAVLSGYGLSq--SSIKYV 184 Methanocaldococcus ...

1NMP_A   184 RFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERG--GI---RALSEWLN-ENTDLDVTFIDIPNPA 247 Escherichia coli O157:H7 str....
P75743   184 RFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERG--GI---RALSEWLN-ENTDLDVTFIDIPNPA 247 Escherichia coli
O28497   182 DAGVELFITGEPEHEAYHLAKEGGINVFFLGHYESEKF--GV---QSLMEVVR-EKLGIEAVFLDIPTNL 245 Archaeoglobus fulgidus DSM 4304
O51424   185 CHDVDLFITGDTSHQIYSLAEEFGVNLIFAGHYFTETF--GL---IKLMEDFK-IQEDLEVKFICKNTNL 248 Borrelia burgdorferi B31
O27214   164 SEGVSAYLSGDLTHGPAILGRNMDLTLIDAGHHATEMP--GLhrlREVIEDFGvMAELLDTGTPWSEYRA 231 Methanothermobacter thermauto...
P53081   221 KEDVDLYYTGEMSHHEVLKWKEMGKTVIVCNHSNTERG--FL---QDVMKGLL-QDEGHEVVVSKMDCDP 284 Saccharomyces cerevisiae S288c
O25613   178 LKAQSCLITGDVKYHDAMIAQSLGISLIDATHYYSERG--FA---LIVAEILHsFNYLVTIENFKNPLQI 242 Helicobacter pylori 26695
P54472   302 RKGADVYVTGDLYFHVAHDAMMLGLNVVDPGHYAEKIMkeGVt--RKLTSMCNdKKFGVNIFVSETDTNP 369 Bacillus subtilis subsp. subt...
AAC21783 216 EQGCDAFITGEVSEQTIHSAREQGLYFFSAGHHATERY--GI---KALGEWLA-KEYGFDVEFKDIDNPA 279 Haemophilus influenzae Rd KW20
4IWG_A   185 AEKADVYLSGDLTHHSKILAEELGLVVVDATHYSTEVF--GL---KKFKEFLS-SNLDLEIISLDFlehh 248 Methanocaldococcus jannaschii...
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap