Conserved Protein Domain Family
TIGR00423

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TIGR00423: TIGR00423 
radical SAM domain protein, CofH subfamily
This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family. [Hypothetical proteins, Conserved]
Statistics
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PSSM-Id: 273071
Aligned: 8 rows
Threshold Bit Score: 500.384
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P72811        60 VTYVVNRNINFTNICEQHCNFCAFRRDDGQTGAYWLTDSEIFNKTKGAVAQGATEICLQGGLNPQAKIngsslAYYVNLV 139 Synechocystis s...
Q58826        45 VTYVVNRNINFTNICVGNCRFCAFRANENDKHAYFLDIDEIAKRAVEAKKFGCTEVCIQGGLHPKIDT-----YYQAEIL 119 Methanocaldococ...
O26911        54 ITYIENWNINFTNICSGQCGFCAFKRDAADGDSYYLETERILEIAAEAIEKGARELCIQGGLYPGLDT-----YFYEDLI 128 Methanothermoba...
WP_010878301  34 VTYVVNRNINFTDICINDCKFCSFRNRKK----YLLSLDEIKQKVEEAVEFGCTELCIQGGLLPDADL-----DFYLSIL 104 Archaeoglobus f...
WP_010877897  49 VTFVNDTNINYTNICLSKCRFCAFYAREK---GYVLSHEEILRKVGYAVKMGATQIMLQGGMNPDLGL-----EWFEELF 120 Archaeoglobus f...
WP_000113573  67 TTFIVDRNINYTNICFVDCKFCAFKRTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKI-----DYYENLV 141 Helicobacter py...
AIG97208      28 VMFVVNRHINYTDICVAKCPLCAFNNRE----GYLLSPEEILRKVREVD--GITEVHIVGGHNPEVGV-----EYFEEVF 96  Archaeoglobus f...
WP_000346642  45 VYFNVNRHLNPSNICADACKFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSY-----EWYLKVF 119 Helicobacter py...
P72811       140 ETIKGQFP---QLHLHGFSPQEIQFIARQDGLTYGEVLMALKFSGLDSLPGTAAEVLVDRVRRIICPEKIDSQTWLEIIG 216 Synechocystis s...
Q58826       120 KAVHEATKpygDIHIHAFSPMEVYFGAENAGLDIKEALKILKENGLNSMPGTAAEILDDDIRAELCPNKIKTKEWIYIIK 199 Methanocaldococ...
O26911       129 RAIKSEFP---DVHLHSFSPMEVYYGAQNAELTVEEALKILKRAGLGSMPGTAAEILDDDVRAVICPTKLSTGEWVEVIE 205 Methanothermoba...
WP_010878301 105 QAVRDVDK---KIHIHAFSPMEVVHAARNSGMTVEEVLKELKKEGLGSMPGTAAEILDDSIRALICPRKLKTAEWVEVIK 181 Archaeoglobus f...
WP_010877897 121 RKIKARFS---SVHIHSLSPPEIVFLAKLERSSIREVLDRLKAAGLDSLPGGGAEILVDSVRRKISPNKCSSDEWLRVME 197 Archaeoglobus f...
WP_000113573 142 SHIAQKFP---TITIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSSDRWIEVHR 218 Helicobacter py...
AIG97208      97 RRIKREKP---EVVIKALTATEVYYYAKKEKMSIREFLSRLKDAGLQAMPGGGAEILVDSVRRKISPNKCSSDEWLRVMK 173 Archaeoglobus f...
WP_000346642 120 ETIKQEMP---NLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKICNGKVGSSRWLEIHA 196 Helicobacter py...
P72811       217 LAHRHGLPTTSTLMAGHVETPEEIITHLDRLRQRqqtslaQ-------GYAASITEFILLPFVGEKAPpSLRKRVgRDQP 289 Synechocystis s...
Q58826       200 EAHKLGIPTTATMMYGHIEEYKHWVNHLFIIKEI------Q-------EETNGFTEFVPLSFMHKYAPiYKEGKA-KAGA 265 Methanocaldococ...
O26911       206 TAHRVGIPTTCTMMYGHIDGPEHRVEHMDILRRI------Q-------EKTGGFTEFVPLPFMHPHAPiYREGLA-MPGA 271 Methanothermoba...
WP_010878301 182 TAHRVGIPTTATIMYGHIDTWEHRINHLLLIKKI------Q-------QETGGITELIPLPFMSKNN---ELGRY-AKGS 244 Archaeoglobus f...
WP_010877897 198 TAHSLNMPTTATMMFGHVESDGDIVEHLIKIREL------Q-------EKTGGFTAFIPWTFQPGNTE--LYAEI-KRPV 261 Archaeoglobus f...
WP_000113573 219 MAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDL------Q-------DETGGFRAFILWSFQPNNTPlKEEIPS-IKKA 284 Helicobacter py...
AIG97208     174 IAHELGIKSNATMLFGHVEEIRHRAIHLYRLRKL------Q-------EKTGGFVSFIPLVYHPENNP--LGKIV-REKT 237 Archaeoglobus f...
WP_000346642 197 YWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKI------QspknqveNKEGGFNAFIPLLYQKENN--YLNVE---KSP 265 Helicobacter py...
P72811       290 DLDQALQIMAIARLYLGkWIVNHQPSWVKLGLTGATTALEWGCNDLGGTLMEEHITTMAGAKGGTCLTATQLQNAIISTG 369 Synechocystis s...
Q58826       266 TGIEDLKVFAVSRIIFKgLIKNIQASWVKLGKKMVQVALRCGANDVGGTLIEESISRSAGAEHGVYMSVEEIRDMIKRVG 345 Methanocaldococ...
O26911       272 TGADDLKVYAISRLMFRgLIENIQASWVKLGFKFAQVALLSGANDIGGTLGEENISKSAGASHGVRTEPEEIIRVVRDIG 351 Methanothermoba...
WP_010878301 245 SGFDDLLMIAIARILLYpEIKNIQASWVKMGQKLAQAALHVGANDLGGTLMEENISKSAGATSGEFMHPEELRELIKIAG 324 Archaeoglobus f...
WP_010877897 262 SPLRYLQVLAISRIVLN-NFRNIQASWLTQGFEIATLSLFFGANDFGGTMLEENVVRATGKDFRP-AKIEEIVKAVKAVG 339 Archaeoglobus f...
WP_000113573 285 SSNRYLRYLACSRIFLD-NIQNIQSSWVTQGSMIGQLALLFGANDLGSVMMEENVVKAAG--TSFCMNEAGMIELIEDIG 361 Helicobacter py...
AIG97208     238 NPVDILKTIAVSRIALD-NFRSVRAYWVMLGEKLTEVALRFGANDIDGTVVEEKVTHAAGAETPAGLTVERLVEICRSAG 316 Archaeoglobus f...
WP_000346642 266 SAIEILKTIAISRILLN-NIPHIKAYWATLGLNLALVAQEFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAG 344 Helicobacter py...
P72811       370 RPYQQRTTLYEhlnaNL 386 Synechocystis sp. PCC 6803 substr. Kazusa
Q58826       346 LIPKERTTLYK----IL 358 Methanocaldococcus jannaschii DSM 2661
O26911       352 RIPARRDTLYR----EI 364 Methanothermobacter thermautotrophicus str. Delta H
WP_010878301 325 RVPKQRDTLYN----IL 337 Archaeoglobus fulgidus
WP_010877897 340 RPVALRDTYYN----IL 352 Archaeoglobus fulgidus
WP_000113573 362 SVAAKRNTAYE----IL 374 Helicobacter pylori
AIG97208     317 KRVGQRDTFCN----IL 329 Archaeoglobus fulgidus DSM 8774
WP_000346642 345 FVAVERDSLYN----FI 357 Helicobacter pylori
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